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[182838_s_at]

Description T05E12.3 /REP_DB=WormBase Gene ID /WP=CE23948 /TR=Q9XUR6 /GB=CAB04686.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 5.8
(-3)
A 		4.5
(-3)
A 		7.4
(-2.9)
A 		166.9
(3)
P 		162
B 23.6
(-2.2)
A 		9.5
(-2.8)
A 		3.3
(-3)
A 		155.1
(3)
P 		152
C 9.7
(-2.8)
A 		6.3
(-2.9)
A 		2
(-3)
A 		189.4
(3)
P 		187
avr 13
(-2.7) 		6.8
(-2.9) 		4.2
(-3) 		170.5
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 7.6
(-2.9)
A 		3.5
(-3)
A 		5.8
(-2.9)
A 		22.7
(-2.6)
A 		229.1
(2.1)
P 		269
(3)
P 		266
B 8.2
(-2.9)
A 		6.4
(-2.9)
A 		2.9
(-3)
A 		6.4
(-2.9)
A 		278
(3)
P 		256.7
(2.5)
P 		275
C 4.9
(-3)
A 		26.3
(-2.6)
A 		3
(-3)
A 		11.1
(-2.9)
A 		225.3
(0.8)
P 		349.7
(3)
P 		347
avr 6.9
(-2.9) 		12.1
(-2.8) 		3.9
(-3) 		13.4
(-2.8) 		244.1
(2) 		291.8
(3) 		288
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 2.1
(-2.7)
A 		1
(-3)
A 		1.9
(-2.8)
A 		24.4
(3)
P 		23
B 7.5
(-1.8)
A 		2.3
(-2.7)
A 		0.8
(-3)
A 		33
(3)
P 		32
C 3.2
(-2.5)
A 		1.8
(-2.8)
A 		0.7
(-3)
A 		31.9
(3)
P 		31
avr 4.3
(-2.3) 		1.7
(-2.9) 		1.1
(-3) 		29.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 1.4
(-3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		5.7
(-2.6)
A 		69.1
(3)
P 		65.5
(2.7)
P 		68
B 2.9
(-2.9)
A 		2.1
(-2.9)
A 		0.7
(-3)
A 		1.7
(-2.9)
A 		113
(3)
P 		95.7
(2.1)
P 		112
C 1.8
(-2.9)
A 		8
(-2.6)
A 		0.8
(-3)
A 		2.2
(-2.9)
A 		72.9
(0.7)
P 		117.1
(3)
P 		116
avr 2
(-2.9) 		3.8
(-2.8) 		0.9
(-3) 		3.2
(-2.8) 		85
(2.5) 		92.8
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182838_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14746
Sequence Type Exemplar sequence
Representative Public ID T05E12.3 NCBI
Target Description T05E12.3 /REP_DB=WormBase Gene ID /WP=CE23948 /TR=Q9XUR6 /GB=CAB04686.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074923 NCBI Caenorhabditis elegans T05E12.3 (T05E12.3) mRNA, complete cds. 11/11 None
SNAP00000044440 ENSEMBL cdna:SNAP chromosome:CEL140:V:17079493:17080527:-1 9/11 None
GENEFINDER00000044446 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17079493:17092062:-1 11/11 None
T05E12.3 ENSEMBL cdna:known chromosome:CEL140:V:17079493:17080527:-1 gene:T05E12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17079492-17080527(-) 96.56 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E12.3
Entrez Gene 180135 Entrez gene
SwissProt Q9XUR6 EMBL-EBI
WormBase CE23948 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04684 Hypothetical protein T05E12.6 [Caenorhabditis elegans] ref|NP_507327.2| T05E12.6 [Caenorhabditis elegans] 0.0
blast CAB04686 Hypothetical protein T05E12.3 [Caenorhabditis elegans] ref|NP_507324.1| T05E12.3 [Caenorhabditis elegans] 1.0E-130
blast CAB04686 Hypothetical protein T05E12.3 [Caenorhabditis elegans] ref|NP_507324.1| T05E12.3 [Caenorhabditis elegans] 1.0E-108
blast CAB02803 Hypothetical protein C29F3.7 [Caenorhabditis elegans] ref|NP_741643.2| C29F3.7 [Caenorhabditis elegans] 1.0E-104
blast CAB04686 Hypothetical protein T05E12.3 [Caenorhabditis elegans] ref|NP_507324.1| T05E12.3 [Caenorhabditis elegans] 2.0E-79
blast AAB37955 Hypothetical protein ZC239.15 [Caenorhabditis elegans] ref|NP_494481.1| ZC239.15 [Caenorhabditis elegans] 5.0E-22
blast CAE72471 Hypothetical protein CBG19646 [Caenorhabditis briggsae] emb|CAE72378.1| Hypothetical protein CBG19532 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.7E-22
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.3E-19
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 6.7E-42
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.3E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044446 1 21-40
Sequence
Target Sequence 
>C. ELEGANS:182838_S_AT
gatacaattctcaacttcctgcgagacggtgacgttccactcccagtaaacgagctagtg
ttggctgaggtcagacaagaagcagagttctttcgattgaatggtttgatccaattgtgc
gatgtgaagtctgcgacggtaaaaaaagtcacaatatctgattgtgaggcgaaaaatgtg
ttcaaggaccattttaaaccggcaatcatcaacgacgatcaaaaaatggtggagattttg
gctaacatagataaaaaaccggtgttaatcgtttccttctacattccacgaaatggattg
attcatttcccgtcgggattcacgttcaagacttttgtcgagctttaccagaaccgattg
gatgtttatttcaaagtcacacattatgcaactgatgatgaacagccgacatctaactgg
agttttgggatttacggaaaacggaaagactgtgatatcattcgttccggacctcttctt
aattttatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACAATTCTCAACTTCCTGCGAG 531 423 229 Antisense
TTCCTGCGAGACGGTGACGTTCCAC 32 699 244 Antisense
TGACGTTCCACTCCCAGTAAACGAG 170 567 258 Antisense
TGTGCGATGTGAAGTCTGCGACGGT 293 557 344 Antisense
GGACCATTTTAAACCGGCAATCATC 523 521 414 Antisense
GTTTCCTTCTACATTCCACGAAATG 598 449 499 Antisense
ATGGATTGATTCATTTCCCGTCGGG 611 51 521 Antisense
TCCCGTCGGGATTCACGTTCAAGAC 36 597 536 Antisense
GACTTTTGTCGAGCTTTACCAGAAC 517 371 558 Antisense
CTGTGATATCATTCGTTCCGGACCT 430 239 678 Antisense
TTCCGGACCTCTTCTTAATTTTATG 41 699 693 Antisense
Sequence Source Affymetrix Proprietary Database