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[182837_s_at]

Description W10D5.3A /REP_DB=WormBase Gene ID /WP=CE14782 /TR=Q94363 /GB=CAB02134.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 66      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 87      6grp_total > 57      4grp_total > 39      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 692
1 2 3 4 range
A 1211.3
(3)
P 		674.7
(-2)
P 		566.3
(-3)
P 		771.6
(-1.1)
P 		645
B 1130.7
(3)
P 		662
(-3)
P 		697
(-2.6)
P 		909
(0.2)
P 		469
C 1258.1
(3)
P 		677.7
(-3)
P 		678.4
(-3)
P 		776.7
(-2)
P 		580
avr 1200
(3) 		671.5
(-2.7) 		647.2
(-3) 		819.1
(-1.1) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 771
1 2 3 4 5 6 range
A 910.1
(-3)
P 		1144.6
(-0.4)
P 		951.9
(-2.5)
P 		1105.8
(-0.8)
P 		1035.7
(-1.6)
P 		1450.2
(3)
P 		540
B 1400.2
(2.3)
P 		1102.4
(-0.5)
P 		1167.2
(0.1)
P 		1133.4
(-0.2)
P 		832
(-3)
P 		1476.1
(3)
P 		644
C 1105.5
(-1.5)
P 		1140.9
(-1.1)
P 		1206.8
(-0.6)
P 		1314.7
(0.4)
P 		933.3
(-3)
P 		1603.4
(3)
P 		670
avr 1138.6
(-0.9) 		1129.3
(-1) 		1108.6
(-1.2) 		1184.6
(-0.4) 		933.7
(-3) 		1509.9
(3) 		576
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 441
(3)
P 		146.5
(-2.4)
P 		148
(-2.4)
P 		113
(-3)
P 		328
B 360.6
(3)
P 		163.5
(-2.9)
P 		161.5
(-3)
P 		193.7
(-2)
P 		199
C 416.5
(3)
P 		194.9
(-1.7)
P 		236.4
(-0.8)
P 		131
(-3)
P 		286
avr 406
(3) 		168.3
(-2.5) 		182
(-2.2) 		145.9
(-3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 167.8
(-3)
P 		407.1
(3)
P 		207.3
(-2)
P 		280.5
(-0.2)
P 		312.5
(0.6)
P 		353.1
(1.6)
P 		239
B 487.2
(1.6)
P 		367
(-1.1)
P 		283.4
(-3)
P 		300.2
(-2.6)
P 		338
(-1.8)
P 		550.4
(3)
P 		267
C 409.8
(0.2)
P 		348.1
(-1.2)
P 		307.2
(-2.1)
P 		264.4
(-3)
P 		302
(-2.2)
P 		536.7
(3)
P 		272
avr 354.9
(-0.5) 		374.1
(0) 		266
(-3) 		281.7
(-2.6) 		317.5
(-1.6) 		480.1
(3) 		214
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182837_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1314
Sequence Type Exemplar sequence
Representative Public ID W10D5.3A NCBI
Target Description W10D5.3A /REP_DB=WormBase Gene ID /WP=CE14782 /TR=Q94363 /GB=CAB02134.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026507(11), NM_060043(11), NM_001026506(9), NM_060041(11), NM_060042(11), NM_001026508(11), NR_000051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026507 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 None
NM_060043 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 A 
NM_001026506 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 9/11 None
NM_060041 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 None
NM_060042 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 None
NM_001026508 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 None
NR_000051 NCBI Caenorhabditis elegans gei-17, miscRNA. 11/11 A 
W10D5.3f ENSEMBL cdna:known chromosome:CEL140:I:9108977:9116063:-1 gene:W10D5.3 11/11 A 
W10D5.3e ENSEMBL cdna:known chromosome:CEL140:I:9108978:9115663:-1 gene:W10D5.3 9/11 A 
W10D5.3c ENSEMBL cdna:known chromosome:CEL140:I:9108978:9115663:-1 gene:W10D5.3 11/11 A 
W10D5.3a ENSEMBL cdna:known chromosome:CEL140:I:9109299:9115663:-1 gene:W10D5.3 11/11 None
W10D5.3d ENSEMBL cdna:known chromosome:CEL140:I:9109299:9115663:-1 gene:W10D5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007419 3/11 Cross Hyb Matching Probes None
SNAP00000007420 5/11 Cross Hyb Matching Probes None
GENEFINDER00000007424 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9109229-9115594(-) 98.07 100.0
Public Domain and Genome References
Ensembl W10D5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD98730 Hypothetical protein W10D5.3f [Caenorhabditis elegans] ref|NP_001021678.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAB02134 Hypothetical protein W10D5.3a [Caenorhabditis elegans] ref|NP_492442.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAB54321 Hypothetical protein W10D5.3d [Caenorhabditis elegans] ref|NP_492443.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAB02133 Hypothetical protein W10D5.3c [Caenorhabditis elegans] ref|NP_492444.2| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAI79179 Hypothetical protein W10D5.3g [Caenorhabditis elegans] ref|NP_001021679.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAD98729 Hypothetical protein W10D5.3e [Caenorhabditis elegans] ref|NP_001021677.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 4.6E-43
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 4.6E-43
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 4.6E-43
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 4.6E-43
Sequence
Target Sequence 
>C. ELEGANS:182837_S_AT
gaactctctgaacgacagcttctctcctggcagacacacagcttccgcagaattggctgc
tcaaaagacaccaccacagcagaaaaagaagacgaaagacgatgacatagagattattac
tctcgatgatacaccacctcgtccagtagctgcaagtgcaaatcttccaatgcgtcagat
gtctcaacagaatcaaatgccagttggctcatctccatctggaatggcctcaacgcaaat
gggaatgaacgagggtgcaagtaaaactatccgggatgcgctgaacaaaataggagaacc
aatgataaaccaggcaccacacttccaaatgcaaaacgggctcatagggcgaaacaatca
aatggttcatatgcagcagcaccatcttcagcagcaacaacagcagcagcagtcaccaca
aatcatgtctccgtctttttatgctcaacagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTCTCTGAACGACAGCTTCTCT 485 349 1560 Antisense
ACACACAGCTTCCGCAGAATTGGCT 413 111 1593 Antisense
TGGCTGCTCAAAAGACACCACCACA 576 543 1613 Antisense
TATTACTCTCGATGATACACCACCT 293 663 1674 Antisense
CTTCCAATGCGTCAGATGTCTCAAC 399 219 1723 Antisense
CCAGTTGGCTCATCTCCATCTGGAA 619 271 1759 Antisense
CATCTGGAATGGCCTCAACGCAAAT 442 211 1775 Antisense
AATGATAAACCAGGCACCACACTTC 135 165 1860 Antisense
GTTCATATGCAGCAGCACCATCTTC 659 443 1924 Antisense
CAGTCACCACAAATCATGTCTCCGT 487 207 1969 Antisense
CTCCGTCTTTTTATGCTCAACAGCA 639 233 1988 Antisense
Sequence Source Affymetrix Proprietary Database