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[182836_at]

Description C29G2.6 /REP_DB=WormBase Gene ID /WP=CE08467 /TR=O16887 /GB=AAB69889.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 45      6grp_total > 91      4grp_total > 03      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7575
1 2 3 4 range
A 1504.3
(-2.4)
P 		792.4
(-3)
P 		788.2
(-3)
P 		8302.4
(3)
P 		7514
B 1571
(-2.3)
P 		818.4
(-2.9)
P 		753.4
(-3)
P 		7485.8
(3)
P 		6732
C 1551.5
(-2.2)
P 		759.5
(-3)
P 		727.2
(-3)
P 		7254.7
(3)
P 		6528
avr 1542.3
(-2.3) 		790.1
(-3) 		756.3
(-3) 		7681
(3) 		6925

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2241
1 2 3 4 5 6 range
A 2146.2
(-1.2)
P 		1761.7
(-2.8)
P 		1741.3
(-2.9)
P 		3208.1
(3)
P 		3187.9
(2.9)
P 		1704.5
(-3)
P 		1504
B 1714.6
(-2.7)
P 		1756.6
(-2.5)
P 		1609.7
(-3)
P 		2935.8
(1.1)
P 		3561
(3)
P 		1737
(-2.6)
P 		1951
C 1577.4
(-3)
P 		1721.1
(-2.6)
P 		1781
(-2.5)
P 		3818.4
(3)
P 		2886.3
(0.5)
P 		1767.6
(-2.5)
P 		2241
avr 1812.7
(-2.6) 		1746.5
(-2.9) 		1710.7
(-3) 		3320.8
(3) 		3211.7
(2.6) 		1736.4
(-2.9) 		1610
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1423
1 2 3 4 range
A 547.7
(-0.8)
P 		172
(-3)
P 		206
(-2.8)
P 		1215.3
(3)
P 		1043
B 501
(-1.6)
P 		202.1
(-2.9)
P 		174.6
(-3)
P 		1595.2
(3)
P 		1421
C 513.6
(-1.2)
P 		218.4
(-3)
P 		253.5
(-2.8)
P 		1223.3
(3)
P 		1005
avr 520.8
(-1.3) 		197.5
(-3) 		211.4
(-2.9) 		1344.6
(3) 		1147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1068
1 2 3 4 5 6 range
A 395.6
(-2.8)
P 		626.6
(-0.5)
P 		379.2
(-3)
P 		813.7
(1.5)
P 		962
(3)
P 		415
(-2.6)
P 		583
B 596.6
(-1.8)
P 		584.7
(-1.9)
P 		390.9
(-3)
P 		777.6
(-0.8)
P 		1446.8
(3)
P 		647.7
(-1.5)
P 		1056
C 584.7
(-1.4)
P 		525.2
(-2.1)
P 		453.3
(-3)
P 		767.9
(0.9)
P 		934
(3)
P 		591.7
(-1.3)
P 		481
avr 525.6
(-2) 		578.8
(-1.5) 		407.8
(-3) 		786.4
(0.2) 		1114.3
(3) 		551.5
(-1.8) 		707
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15636
Sequence Type Exemplar sequence
Representative Public ID C29G2.6 NCBI
Target Description C29G2.6 /REP_DB=WormBase Gene ID /WP=CE08467 /TR=O16887 /GB=AAB69889.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071307 NCBI Caenorhabditis elegans C29G2.6 (C29G2.6) mRNA, complete cds. 11/11 None
C29G2.6 ENSEMBL cdna:known chromosome:CEL140:V:2582692:2585736:-1 gene:C29G2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002210 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2582769-2585722(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29G2.6
Entrez Gene 183035 Entrez gene
SwissProt O16887 EMBL-EBI
WormBase CE08467 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69889 Hypothetical protein C29G2.6 [Caenorhabditis elegans] ref|NP_503708.1| C29G2.6 [Caenorhabditis elegans] 1.0E-118
blast CAE62515 Hypothetical protein CBG06620 [Caenorhabditis briggsae] 1.0E-112
blast CAE59104 Hypothetical protein CBG02399 [Caenorhabditis briggsae] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:182836_AT
gaaatgtgtgaatctgcccgttctctcgaagctagtcgatggcaagaacatctctgcgga
aatgtacgacgatattgataagtatacggactatggttgcatttttaccactggttgcca
ggacgagtgtaacgattgcccgttgtgtttgacgtccaaactgcaaatcgtcgacatttt
gtcgggagagaaatcgtcggctgaatgtcccactctgatggactgtgccttaaaatgtgt
tgccgaatcgaatcaagacattttccaaatcaataagtgcctacgacaggactgtgcttt
ccactgtttcgatggctcttgcccaaagtgctcagggttcattacaagagtgttcaacca
aatgtgcgcggccggaaacttccgccagaaaatcaagggctactcaggaccgtgctacga
gatgttccacgaaattgtgcgcgccaagtttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGTGTGAATCTGCCCGTTCTC 532 361 123 Antisense
GGTTGCATTTTTACCACTGGTTGCC 191 505 217 Antisense
ACGATTGCCCGTTGTGTTTGACGTC 213 95 254 Antisense
AGAAATCGTCGGCTGAATGTCCCAC 62 73 311 Antisense
GTCCCACTCTGATGGACTGTGCCTT 418 475 329 Antisense
TACGACAGGACTGTGCTTTCCACTG 283 647 404 Antisense
TGGCTCTTGCCCAAAGTGCTCAGGG 455 543 435 Antisense
AGTGTTCAACCAAATGTGCGCGGCC 658 59 471 Antisense
AATCAAGGGCTACTCAGGACCGTGC 4 171 513 Antisense
AGGACCGTGCTACGAGATGTTCCAC 661 53 528 Antisense
CGAAATTGTGCGCGCCAAGTTTGCC 72 253 552 Antisense
Sequence Source Affymetrix Proprietary Database