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[182835_at]

Description F13C5.3 /REP_DB=WormBase Gene ID /WP=CE19385 /TR=O76562 /GB=AAC64613.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 50      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 39.2
(-2.9)
A 		123.6
(3)
A 		111.8
(2.2)
A 		37.6
(-3)
A 		86
B 45.7
(-1.4)
A 		143
(3)
A 		135.3
(2.7)
A 		9.1
(-3)
A 		134
C 26.7
(-3)
A 		132.4
(3)
A 		88.7
(0.5)
A 		87.9
(0.5)
A 		106
avr 37.2
(-3) 		133
(3) 		111.9
(1.7) 		44.9
(-2.5) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 114.5
(3)
A 		55.7
(-0.8)
A 		41.3
(-1.8)
A 		22.3
(-3)
A 		103.9
(2.3)
A 		73.8
(0.4)
A 		92
B 67.5
(0.2)
A 		83.9
(3)
A 		76.9
(1.8)
A 		64.3
(-0.3)
A 		48.4
(-3)
A 		71.9
(1)
A 		36
C 57.2
(-0.9)
A 		89.8
(3)
A 		45.5
(-2.2)
A 		89.9
(3)
A 		39.1
(-3)
A 		47.2
(-2)
A 		51
avr 79.7
(3) 		76.5
(2.2) 		54.6
(-3) 		58.8
(-2) 		63.8
(-0.8) 		64.3
(-0.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 14.3
(-0.8)
A 		26.8
(2.4)
A 		29.2
(3)
A 		5.5
(-3)
A 		24
B 14.6
(-0.7)
A 		35.3
(3)
A 		31.3
(2.3)
A 		1.9
(-3)
A 		33
C 8.8
(-3)
A 		38.1
(3)
A 		30.9
(1.5)
A 		14.8
(-1.8)
A 		29
avr 12.6
(-1.8) 		33.4
(3) 		30.5
(2.3) 		7.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 21.1
(0.6)
A 		19.8
(0.3)
A 		9
(-2.2)
A 		5.7
(-3)
A 		31.4
(3)
A 		18
(-0.1)
A 		26
B 23.5
(0.6)
A 		27.9
(3)
A 		18.7
(-2.1)
A 		17
(-3)
A 		19.7
(-1.5)
A 		26.8
(2.4)
A 		11
C 21.2
(0.6)
A 		27.4
(3)
A 		11.6
(-3)
A 		18.1
(-0.5)
A 		12.7
(-2.6)
A 		15.8
(-1.4)
A 		16
avr 21.9
(1.4) 		25
(3) 		13.1
(-3) 		13.6
(-2.7) 		21.3
(1.1) 		20.2
(0.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18133
Sequence Type Exemplar sequence
Representative Public ID F13C5.3 NCBI
Target Description F13C5.3 /REP_DB=WormBase Gene ID /WP=CE19385 /TR=O76562 /GB=AAC64613.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075724(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075724 NCBI Caenorhabditis elegans F13C5.3 (F13C5.3) mRNA, complete cds. 10/11 None
GENEFINDER00000042507 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:596314:601427:-1 10/11 None
F13C5.3 ENSEMBL cdna:known chromosome:CEL140:X:596314:598085:-1 gene:F13C5.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042501 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:596313-598085(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13C5.3
Entrez Gene 184411 Entrez gene
SwissProt O76562 EMBL-EBI
WormBase CE35470 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64613 Hypothetical protein F13C5.3 [Caenorhabditis elegans] ref|NP_508125.2| F13C5.3 [Caenorhabditis elegans] 1.0E-159
blast CAE63645 Hypothetical protein CBG08143 [Caenorhabditis briggsae] 1.0E-135
blast AAC64612 Hypothetical protein F13C5.4 [Caenorhabditis elegans] ref|NP_508126.1| F13C5.4 [Caenorhabditis elegans] 4.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182835_AT
agttgcaggtaacccactgaatctaaaaaatgacacgtttgaagaacttgctgtagcata
tggacggctcagaaaacacatcaagctttcagacagccgtggacacaccttcagtacatt
ggcatttgggataaagtcacgaattttggtgacatcacccagtcatgctccacaagcggt
tgaagcaatatccgatgagctcagtgatgctccgctgaaggtattggacacgtgtcataa
agatatttgcacatatgattacatgaaaaatgcaacatttaatccaaaaactgaaacata
cagttacgtgaaggagaatgcattaatcaacacagttcatcccagatactcactcattgc
ttttcaaaaatccaagccttactttacatttgaaaaaatgaaacgtaaaactgcaaccaa
aattatcgatgtcaagcaaaacctggacactaaagcaaaaaatctctggtcatcattgtt
ggatcaacaatttacattagccattcatgtgcacaatcaggaacttttcccatttgatca
att

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGCAGGTAACCCACTGAATCTA 306 65 336 Antisense
AGCTTTCAGACAGCCGTGGACACAC 76 79 419 Antisense
GTGGACACACCTTCAGTACATTGGC 691 489 434 Antisense
TTTGGTGACATCACCCAGTCATGCT 169 665 480 Antisense
CAGTCATGCTCCACAAGCGGTTGAA 598 205 495 Antisense
GATGAGCTCAGTGATGCTCCGCTGA 487 411 529 Antisense
ATCAACACAGTTCATCCCAGATACT 296 27 661 Antisense
CCAGATACTCACTCATTGCTTTTCA 530 271 677 Antisense
AAATCCAAGCCTTACTTTACATTTG 84 105 703 Antisense
AAAATCTCTGGTCATCATTGTTGGA 461 133 794 Antisense
AGGAACTTTTCCCATTTGATCAATT 613 53 854 Antisense
Sequence Source Affymetrix Proprietary Database