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[182834_s_at]

Description K06B9.2 /REP_DB=WormBase Gene ID /WP=CE07340 /TR=Q21261 /GB=AAA93450.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 95      6grp_total > 98      4grp_total > 56      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 261.7
(-3)
P 		525.7
(0.1)
P 		765.4
(3)
P 		328.8
(-2.2)
P 		504
B 321.7
(-3)
P 		404.2
(-1.8)
P 		732.9
(3)
P 		345.4
(-2.7)
P 		411
C 298.5
(-3)
P 		467.4
(-0.7)
P 		745.7
(3)
P 		360.3
(-2.2)
P 		447
avr 294
(-3) 		465.8
(-0.7) 		748
(3) 		344.8
(-2.3) 		454

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 944
1 2 3 4 5 6 range
A 294.3
(-3)
P 		460.8
(-1.7)
P 		555.1
(-1)
P 		665.9
(-0.1)
P 		894.2
(1.7)
P 		1058
(3)
P 		764
B 338.7
(-3)
P 		406.3
(-2.5)
P 		488.6
(-2)
P 		498.1
(-1.9)
P 		1074.4
(1.9)
P 		1238.2
(3)
P 		900
C 366.5
(-3)
P 		474.3
(-2.2)
P 		476.4
(-2.2)
P 		393.1
(-2.8)
P 		1002.4
(1.8)
P 		1159
(3)
P 		793
avr 333.2
(-3) 		447.1
(-2.2) 		506.7
(-1.7) 		519
(-1.6) 		990.3
(1.8) 		1151.7
(3) 		819
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 95.3
(-1.1)
P 		114.1
(-0.4)
P 		200.1
(3)
P 		48.1
(-3)
P 		152
B 102.6
(-1.2)
P 		99.8
(-1.4)
P 		169.8
(3)
P 		73.6
(-3)
P 		96
C 98.8
(-1.9)
P 		134.4
(-0.8)
P 		259.9
(3)
P 		60.8
(-3)
P 		199
avr 98.9
(-1.5) 		116.1
(-0.8) 		209.9
(3) 		60.8
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 54.3
(-3)
P 		163.9
(0.1)
P 		120.9
(-1.1)
P 		168.9
(0.2)
P 		269.8
(3)
P 		257.6
(2.7)
P 		216
B 117.8
(-3)
P 		135.2
(-2.7)
P 		118.6
(-3)
P 		131.9
(-2.8)
P 		436.5
(2.6)
P 		461.7
(3)
P 		344
C 135.8
(-1.9)
P 		144.7
(-1.7)
P 		121.3
(-2.2)
P 		79
(-3)
P 		324.4
(1.8)
P 		388
(3)
P 		309
avr 102.6
(-3) 		147.9
(-2) 		120.3
(-2.6) 		126.6
(-2.5) 		343.6
(2.4) 		369.1
(3) 		267
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182834_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10898
Sequence Type Exemplar sequence
Representative Public ID K06B9.2 NCBI
Target Description K06B9.2 /REP_DB=WormBase Gene ID /WP=CE07340 /TR=Q21261 /GB=AAA93450.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068110(11), NM_065376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068110 NCBI Caenorhabditis elegans K06B9.2 (K06B9.2) mRNA, complete cds. 11/11 None
NM_065376 NCBI Caenorhabditis elegans C36A4.4 (C36A4.4) mRNA, complete cds. 11/11 A 
SNAP00000028394 ENSEMBL cdna:SNAP chromosome:CEL140:III:3841469:3843587:-1 11/11 None
GENEFINDER00000028409 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3841469:3843587:-1 11/11 None
SNAP00000011534 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4194282:4195887:1 11/11 None
GENEFINDER00000011542 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4194282:4195887:1 11/11 None
C36A4.4.1 ENSEMBL cdna:known chromosome:CEL140:III:3841239:3843593:-1 gene:C36A4.4 11/11 None
C36A4.4.2 ENSEMBL cdna:known chromosome:CEL140:III:3841239:3843591:-1 gene:C36A4.4 11/11 None
K06B9.2 ENSEMBL cdna:known chromosome:CEL140:IV:4194282:4195887:1 gene:K06B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4195004-4195893(+) 97.26 97.26
chrIII:3841468-3842357(-) 96.14 96.14
Public Domain and Genome References
Gene Title

Ensembl C36A4.4
K06B9.2
Entrez Gene 175497 Entrez gene
187060 Entrez gene
SwissProt Q18493 EMBL-EBI
Q21261 EMBL-EBI
WormBase CE27831 Wormbase
CE07340 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91270 Hypothetical protein C36A4.4 [Caenorhabditis elegans] ref|NP_497777.1| C36A4.4 [Caenorhabditis elegans] sp|Q18493|UAP1_CAEEL Probable UDP-N-acetylglucosamine pyrophosphorylase 0.0
blast T19764 hypothetical protein C36A4.4 - Caenorhabditis elegans 0.0
blast CAE58357 Hypothetical protein CBG01478 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 5.0E-21
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 1.2E-23
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 2.4E-21
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 2.4E-21
Sequence
Target Sequence 
>C. ELEGANS:182834_S_AT
gacgttgcaaccaagtgtgttccgaagcaaaaaggagaactcgtcggatcagtttttctt
gatagaggactaccacgtgtcgttgaatattcggagcttggagccgagttggctgaacaa
aagacaccggatggaaaatatttgtttggtgcaggatctattgcaaatcactttttcacg
atgaatttcatggatagagtctgctctccatcatctcgtcttccatatcatcgtgctcac
aagaagatttcctatgtgaatgagcaagggaccattgtcaaaccggaaaatccaaatggg
atcaagctggagcagtttattttcgacgtcttcgagctctcgaagcgatttttcatttgg
gaggtggcgaggaacgaagagttttctccattgaaaaatgctcaatctgttggaactgat
tgtttgagcacttgtcagagagatttgtccaatgtgaacaagttgtggctggaacgtgtt
caagcgaaagtgactgctactgaaaagccgatctacttgaagacaatcgtctcctacaac
ggagagagtcttcaagaactccgtcatcgtgaaatttctgatagtgccttggaatccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTGCAACCAAGTGTGTTCCGA 413 377 187 Antisense
GATAGAGGACTACCACGTGTCGTTG 29 423 247 Antisense
GGAGCTTGGAGCCGAGTTGGCTGAA 262 521 279 Antisense
ATGGATAGAGTCTGCTCTCCATCAT 704 51 376 Antisense
TCTTCCATATCATCGTGCTCACAAG 36 619 405 Antisense
GGAGCAGTTTATTTTCGACGTCTTC 258 521 495 Antisense
GCGATTTTTCATTTGGGAGGTGGCG 599 287 531 Antisense
GGAACTGATTGTTTGAGCACTTGTC 8 531 598 Antisense
GAGCACTTGTCAGAGAGATTTGTCC 60 391 612 Antisense
GAACTCCGTCATCGTGAAATTTCTG 438 349 742 Antisense
TTCTGATAGTGCCTTGGAATCCGAT 703 691 762 Antisense
Sequence Source Affymetrix Proprietary Database