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[182833_at] 7TM chemoreceptor, srw family

Description T05B4.7 /REP_DB=WormBase Gene ID /WP=CE13205 /TR=O16415 /GB=AAC69064.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 26      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 8.4
(-3)
A 		21.8
(-1.5)
A 		50
(1.7)
A 		61.9
(3)
A 		54
B 37.2
(-0.5)
A 		71.2
(3)
A 		30
(-1.3)
A 		13.1
(-3)
A 		58
C 28.5
(-3)
A 		87.9
(0.2)
A 		34.3
(-2.7)
A 		141.3
(3)
P 		113
avr 24.7
(-3) 		60.3
(1.5) 		38.1
(-1.3) 		72.1
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 78.2
(0.3)
A 		13.2
(-3)
A 		81.5
(0.5)
M 		14.3
(-2.9)
A 		131.8
(3)
A 		13.1
(-3)
A 		119
B 46.4
(1.3)
A 		60.9
(3)
A 		29.6
(-0.6)
A 		42.2
(0.8)
A 		42.6
(0.9)
A 		9.4
(-3)
A 		52
C 28.3
(-1.4)
A 		87.5
(3)
A 		27.9
(-1.5)
A 		52.4
(0.4)
A 		7.4
(-3)
A 		7.5
(-3)
A 		80
avr 51
(1.9) 		53.9
(2.2) 		46.3
(1.3) 		36.3
(0.1) 		60.6
(3) 		10
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.1
(-3)
A 		4.7
(-2)
A 		13.1
(3)
A 		9.1
(0.6)
A 		10
B 11.9
(0.7)
A 		17.6
(3)
A 		6.9
(-1.3)
A 		2.8
(-3)
A 		15
C 9.4
(-3)
A 		25.3
(3)
A 		11.9
(-2.1)
A 		23.8
(2.4)
P 		16
avr 8.1
(-3) 		15.9
(3) 		10.6
(-1.1) 		11.9
(-0.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 14.4
(-1.2)
A 		4.7
(-2.8)
A 		17.8
(-0.6)
M 		3.6
(-2.9)
A 		39.8
(3)
A 		3.2
(-3)
A 		37
B 16.2
(1.5)
A 		20.3
(3)
A 		7.2
(-1.7)
A 		11.2
(-0.3)
A 		17.3
(1.9)
A 		3.5
(-3)
A 		17
C 10.5
(-1)
A 		26.7
(3)
A 		7.1
(-1.8)
A 		10.5
(-1)
A 		2.4
(-3)
A 		2.5
(-3)
A 		24
avr 13.7
(0.8) 		17.2
(2.1) 		10.7
(-0.3) 		8.4
(-1.1) 		19.8
(3) 		3.1
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182833_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15674
Sequence Type Exemplar sequence
Representative Public ID T05B4.7 NCBI
Target Description T05B4.7 /REP_DB=WormBase Gene ID /WP=CE13205 /TR=O16415 /GB=AAC69064.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071742 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-134) (srw-134) mRNA, complete cds. 11/11 None
T05B4.7 ENSEMBL cdna:known chromosome:CEL140:V:4110409:4112429:-1 gene:T05B4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4110408-4112429(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-134
Ensembl T05B4.7
Entrez Gene 188103 Entrez gene
SwissProt O16415 EMBL-EBI
WormBase CE13205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69064 Serpentine receptor, class w protein 134 [Caenorhabditis elegans] ref|NP_504143.1| Serpentine Receptor, class W family member (srw-134) [Caenorhabditis elegans] 0.0
blast AAC69063 Serpentine receptor, class w protein 133 [Caenorhabditis elegans] ref|NP_504144.2| Serpentine Receptor, class W family member (srw-133) [Caenorhabditis elegans] 1.0E-118
blast AAC69057 Serpentine receptor, class w protein 132 [Caenorhabditis elegans] ref|NP_504142.2| Serpentine Receptor, class W family member (srw-132) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504143.1 7 37-59,66-88,103-120,158-180,223-245,273-295,310-332
T05B4.7 7 37-59,66-88,103-120,158-180,223-245,273-295,310-332
Sequence
Target Sequence 
>C. ELEGANS:182833_AT
tccgccatctgcataattttttcaattagtacagttttcgagaacgatgttggagttgtt
ggaaaacaaccatcaaaatgtagttcacatggtgttttaatgtatgcatttactatcagt
gatttattcttgttaaatgacggacttttactgaaagtttccacattcaccgcagcgatt
gtttcacatatcatcccatgcataatcttcccaatcatcactgttttactagtaaaagaa
ttaagaaaaactgatgaaagacggaaaaactcaacatcttccaagaaaatcacagattct
cgaaaaacaacaaagttggttttctataacacaatcctattccttatcgctgagtttcct
cttggtgtgagcatggcaattacctggttttttgtagatgttcccggattgcaactaatt
tgcaaccactgcctatttcttttttccatgattttgacaattaacacatgctcccatttt
attatctccatgctaatgtcatctcaataccggaaaactgcgatgaacttgttttcaatc
ggttgtttttcgaaggggggctttctagttctatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCCATCTGCATAATTTTTTCAA 88 597 514 Antisense
TTCACCGCAGCGATTGTTTCACATA 79 687 679 Antisense
ATATCATCCCATGCATAATCTTCCC 374 19 701 Antisense
TAATCTTCCCAATCATCACTGTTTT 668 635 716 Antisense
CAATCCTATTCCTTATCGCTGAGTT 171 183 845 Antisense
GAGCATGGCAATTACCTGGTTTTTT 146 389 882 Antisense
TTGCAACCACTGCCTATTTCTTTTT 436 703 933 Antisense
TTGACAATTAACACATGCTCCCATT 198 705 967 Antisense
TGCTCCCATTTTATTATCTCCATGC 471 581 982 Antisense
ATCTCCATGCTAATGTCATCTCAAT 540 33 997 Antisense
GAAGGGGGGCTTTCTAGTTCTATAT 92 333 1065 Antisense
Sequence Source Affymetrix Proprietary Database