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[182832_at]

Description K09C4.6 /REP_DB=WormBase Gene ID /WP=CE04734 /TR=Q21379 /GB=AAA83621.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_total > 12      4grp_total > 10      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 124
(-3)
P 		145.6
(-2.2)
P 		160.3
(-1.7)
P 		289.2
(3)
P 		165
B 143.7
(-3)
P 		161.8
(-0)
P 		155
(-1.1)
P 		180.2
(3)
P 		37
C 173.1
(-0.5)
P 		162.3
(-1.1)
P 		131.1
(-3)
P 		232
(3)
P 		101
avr 146.9
(-3) 		156.6
(-2.3) 		148.8
(-2.9) 		233.8
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 180
(3)
P 		165.5
(2.2)
P 		140.2
(0.8)
P 		97.1
(-1.5)
P 		166.5
(2.3)
P 		69.5
(-3)
A 		111
B 119
(-0.2)
P 		147
(1.5)
P 		172.5
(3)
P 		82.3
(-2.5)
P 		98.8
(-1.5)
P 		73.5
(-3)
P 		99
C 118.1
(-1)
P 		187.2
(3)
P 		102.7
(-1.9)
P 		130.1
(-0.3)
P 		84.1
(-3)
P 		84.1
(-3)
P 		103
avr 139
(1.2) 		166.6
(3) 		138.5
(1.1) 		103.2
(-1.2) 		116.5
(-0.3) 		75.7
(-3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 45.1
(3)
P 		31.6
(-3)
P 		41.9
(1.6)
P 		42.3
(1.8)
P 		14
B 45.8
(3)
P 		40
(-0.5)
P 		35.9
(-3)
P 		38.4
(-1.5)
P 		10
C 57.3
(3)
P 		46.7
(-0.5)
P 		45.7
(-0.8)
P 		39.1
(-3)
P 		18
avr 49.4
(3) 		39.4
(-3) 		41.2
(-1.9) 		39.9
(-2.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 33.2
(-0.7)
P 		58.9
(3)
P 		30.5
(-1.1)
P 		24.6
(-1.9)
P 		50.2
(1.8)
P 		16.9
(-3)
A 		42
B 41.4
(1.3)
P 		48.9
(3)
P 		41.9
(1.5)
P 		21.8
(-3)
P 		40.1
(1.1)
P 		27.4
(-1.8)
P 		27
C 43.8
(0.4)
P 		57.1
(3)
P 		26.1
(-3)
P 		26.2
(-3)
P 		27.2
(-2.8)
P 		28.2
(-2.6)
P 		31
avr 39.5
(-0) 		55
(3) 		32.8
(-1.3) 		24.2
(-3) 		39.2
(-0.1) 		24.2
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18211
Sequence Type Exemplar sequence
Representative Public ID K09C4.6 NCBI
Target Description K09C4.6 /REP_DB=WormBase Gene ID /WP=CE04734 /TR=Q21379 /GB=AAA83621.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076162 NCBI Caenorhabditis elegans K09C4.6 (K09C4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000004471 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3271947:3275602:1 10/11 None
SNAP00000004457 ENSEMBL cdna:SNAP chromosome:CEL140:X:3274746:3275602:1 11/11 None
K09C4.6 ENSEMBL cdna:known chromosome:CEL140:X:3274746:3275602:1 gene:K09C4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3274746-3275603(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09C4.6
Entrez Gene 187196 Entrez gene
SwissProt Q21379 EMBL-EBI
WormBase CE04734 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83621 Hypothetical protein K09C4.6 [Caenorhabditis elegans] ref|NP_508563.1| K09C4.6 [Caenorhabditis elegans] 1.0E-115
blast AAA83621 Hypothetical protein K09C4.6 [Caenorhabditis elegans] ref|NP_508563.1| K09C4.6 [Caenorhabditis elegans] 1.0E-113
blast AAA83620 Hypothetical protein K09C4.7 [Caenorhabditis elegans] ref|NP_508562.1| K09C4.7 [Caenorhabditis elegans] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:182832_AT
tcagcagcaccagaagaccacattgtacttgatgccacgaaatgtcaaaaagtgccagtc
aaattgagcattccggttttcgaaaatgaaggcaatccgcatcgcccatctcctgagcgt
gttggaaaacttcatgataagaaaatgagcactgtttgccagtccaacagtggattggat
acctttgattggttgaccgagtttattggtgagcagttggacaaccttgcaaacttcact
ccgtgtgtcgaaaatcatgaaacgaagcgtagaaaaactgatgatgctgaagaaaatgct
accataaactttatctgcaccccattattagtcaatgtcccaacaaagcaagcaacatca
ctttccagcgttcgatttgtaacaacggacagtttgagaaattcgttgccacgtcatgag
aaattgagagcatccgtttatgacttcggagaaatgaaagcttttctggataacgccaac
atcgaattggaaaaactatttctaccgcgtgattctggtctgattccaattccgtcagag
attctaggaaacagcttgccatcacagacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCAGCACCAGAAGACCACATTG 564 623 19 Antisense
GACCACATTGTACTTGATGCCACGA 348 383 34 Antisense
AATGAAGGCAATCCGCATCGCCCAT 495 165 103 Antisense
AATGAGCACTGTTTGCCAGTCCAAC 424 165 162 Antisense
TGGACAACCTTGCAAACTTCACTCC 616 545 236 Antisense
AACTTCACTCCGTGTGTCGAAAATC 549 139 250 Antisense
TTATCTGCACCCCATTATTAGTCAA 662 677 329 Antisense
AAGCAAGCAACATCACTTTCCAGCG 615 151 364 Antisense
AAACTATTTCTACCGCGTGATTCTG 300 127 511 Antisense
TTCTGGTCTGATTCCAATTCCGTCA 386 693 531 Antisense
GAAACAGCTTGCCATCACAGACAGC 345 355 566 Antisense
Sequence Source Affymetrix Proprietary Database