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[182831_at]

Description F08B4.4 /REP_DB=WormBase Gene ID /WP=CE07045 /TR=Q19195 /GB=AAB37731.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 22      4grp_total > 21      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 90.2
(0)
P 		115.8
(1.1)
P 		17.3
(-3)
A 		162.2
(3)
P 		145
B 118.4
(0.7)
P 		53.8
(-2.2)
P 		35.4
(-3)
A 		170.2
(3)
P 		135
C 132.1
(0.8)
P 		69.9
(-2.4)
P 		58.6
(-3)
P 		175.3
(3)
P 		117
avr 113.6
(0.5) 		79.8
(-1.1) 		37.1
(-3) 		169.2
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 166.4
(3)
P 		150
(1.6)
P 		162.1
(2.6)
P 		113.3
(-1.7)
P 		119
(-1.2)
P 		98.5
(-3)
P 		68
B 204
(2.1)
P 		219
(3)
P 		216
(2.8)
P 		122.1
(-3)
P 		172.4
(0.1)
P 		131.5
(-2.4)
P 		97
C 167.8
(1.7)
P 		184.3
(3)
P 		108.2
(-3)
P 		149.7
(0.3)
P 		137
(-0.7)
P 		115.2
(-2.4)
P 		76
avr 179.4
(2.6) 		184.4
(3) 		162.1
(1.1) 		128.4
(-1.8) 		142.8
(-0.6) 		115.1
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 32.9
(3)
P 		25.1
(1.4)
P 		4.5
(-3)
A 		23.7
(1.1)
P 		28
B 37.8
(3)
P 		13.3
(-2)
P 		8.2
(-3)
A 		36.3
(2.7)
P 		30
C 43.7
(3)
P 		20.1
(-3)
P 		20.4
(-2.9)
P 		29.6
(-0.6)
P 		24
avr 38.1
(3) 		19.5
(-1.1) 		11
(-3) 		29.9
(1.2) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 30.7
(-1.6)
P 		53.4
(3)
P 		35.3
(-0.7)
P 		28.7
(-2)
P 		35.9
(-0.6)
P 		24
(-3)
P 		29
B 71
(2.7)
P 		72.9
(3)
P 		52.4
(-0)
P 		32.4
(-3)
P 		70
(2.6)
P 		49
(-0.5)
P 		41
C 62.2
(3)
P 		56.2
(2)
P 		27.5
(-3)
P 		30.1
(-2.6)
P 		44.3
(-0.1)
P 		38.6
(-1.1)
P 		35
avr 54.6
(1.8) 		60.8
(3) 		38.4
(-1.4) 		30.4
(-3) 		50.1
(0.9) 		37.2
(-1.7) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9022
Sequence Type Exemplar sequence
Representative Public ID F08B4.4 NCBI
Target Description F08B4.4 /REP_DB=WormBase Gene ID /WP=CE07045 /TR=Q19195 /GB=AAB37731.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069087 NCBI Caenorhabditis elegans F08B4.4 (F08B4.4) mRNA, complete cds. 11/11 None
SNAP00000041285 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8678784:8679243:-1 10/11 None
GENEFINDER00000041291 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8678784:8679288:-1 11/11 None
F08B4.4 ENSEMBL cdna:known chromosome:CEL140:IV:8678784:8679288:-1 gene:F08B4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8678789-8679294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08B4.4
Entrez Gene 184172 Entrez gene
SwissProt Q19195 EMBL-EBI
WormBase CE07045 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37731 Hypothetical protein F08B4.4 [Caenorhabditis elegans] ref|NP_501488.1| F08B4.4 [Caenorhabditis elegans] 7.0E-46
blast CAE72482 Hypothetical protein CBG19658 [Caenorhabditis briggsae] 2.0E-27
blast CAE72482 Hypothetical protein CBG19658 [Caenorhabditis briggsae] 3.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501488.1 1 7-29
F08B4.4 1 7-29
GENEFINDER00000041291 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:182831_AT
ttcatttcaattttcatcattacaatggttttagttgctttttgtagtgcaaatttggca
actgggagagcatctctacgaccatctgctgggaaacgtgcagctgttgttggaagatta
cctgctcactactatcaattagcatctgctgtaagatcacctaaacaatacgaaaatgaa
tttacctgtaatgaaaatacaatgtctgtaataaatgcccgttatcaaaaacttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTTCAATTTTCATCATTACAA 530 689 34 Antisense
ATGGTTTTAGTTGCTTTTTGTAGTG 472 49 58 Antisense
TGGGAGAGCATCTCTACGACCATCT 611 553 96 Antisense
ACGACCATCTGCTGGGAAACGTGCA 682 91 111 Antisense
GGGAAACGTGCAGCTGTTGTTGGAA 519 493 124 Antisense
GTTGTTGGAAGATTACCTGCTCACT 104 439 139 Antisense
ATTACCTGCTCACTACTATCAATTA 345 13 150 Antisense
ACTACTATCAATTAGCATCTGCTGT 522 101 161 Antisense
GCATCTGCTGTAAGATCACCTAAAC 564 309 175 Antisense
ACAATGTCTGTAATAAATGCCCGTT 581 111 232 Antisense
TAAATGCCCGTTATCAAAAACTTCA 549 637 245 Antisense
Sequence Source Affymetrix Proprietary Database