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[182830_at]

Description Y59A8B.1 /REP_DB=WormBase Gene ID /WP=CE26205 /TR=Q9GRZ3 /GB=CAC14406.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 31      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 274.2
(3)
P 		72.7
(-3)
A 		118.3
(-1.6)
A 		170.5
(-0.1)
A 		202
B 239
(3)
P 		164.6
(-0.4)
A 		107.6
(-3)
A 		211.5
(1.7)
A 		131
C 263.8
(3)
P 		167.2
(-0.7)
A 		108.1
(-3)
A 		238.7
(2)
A 		156
avr 259
(3) 		134.8
(-2) 		111.3
(-3) 		206.9
(0.9) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 178.4
(0.3)
A 		237
(3)
P 		184
(0.6)
A 		179.3
(0.4)
A 		105.8
(-3)
A 		189
(0.8)
P 		131
B 265.5
(3)
P 		265.2
(3)
P 		110
(-1.4)
A 		55.5
(-3)
A 		87.5
(-2.1)
A 		173.1
(0.4)
A 		210
C 379.8
(3)
P 		207.2
(-0.2)
P 		214.4
(-0)
A 		52.3
(-3)
A 		176.2
(-0.7)
A 		125
(-1.7)
A 		328
avr 274.6
(3) 		236.5
(1.7) 		169.5
(-0.5) 		95.7
(-3) 		123.2
(-2.1) 		162.4
(-0.8) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 99.9
(3)
P 		15.8
(-3)
A 		30.9
(-1.9)
A 		25
(-2.3)
A 		84
B 76.2
(3)
P 		40.6
(-1.2)
A 		24.9
(-3)
A 		45.1
(-0.6)
A 		51
C 87.3
(3)
P 		48.1
(-1.7)
A 		37.7
(-3)
A 		40.3
(-2.7)
A 		50
avr 87.8
(3) 		34.8
(-2.6) 		31.2
(-3) 		36.8
(-2.4) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 32.9
(-2.9)
A 		84.3
(3)
P 		40.1
(-2.1)
A 		45.5
(-1.4)
A 		31.9
(-3)
A 		46
(-1.4)
P 		52
B 92.4
(3)
P 		88.3
(2.7)
P 		26.7
(-2.1)
A 		14.7
(-3)
A 		35.6
(-1.4)
A 		64.6
(0.9)
A 		78
C 140.8
(3)
P 		63.2
(-0.6)
P 		54.6
(-1)
A 		10.5
(-3)
A 		57
(-0.9)
A 		41.8
(-1.6)
A 		130
avr 88.7
(3) 		78.6
(2.1) 		40.5
(-1.4) 		23.6
(-3) 		41.5
(-1.4) 		50.8
(-0.5) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13463
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.1 NCBI
Target Description Y59A8B.1 /REP_DB=WormBase Gene ID /WP=CE26205 /TR=Q9GRZ3 /GB=CAC14406.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002407(11), NM_001029095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002407 NCBI Caenorhabditis elegans dpy-21, miscRNA. 11/11 None
NM_001029095 NCBI Caenorhabditis elegans DumPY : shorter than wild-type family member (dpy-21) (dpy-21) mRNA, complete cds. 11/11 None
SNAP00000028689 ENSEMBL cdna:SNAP chromosome:CEL140:V:17939433:17943506:-1 11/11 None
GENEFINDER00000028711 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17939433:17951604:-1 11/11 None
Y59A8B.1a ENSEMBL cdna:known chromosome:CEL140:V:17938908:17951604:-1 gene:Y59A8B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17939432-17951604(-) 95.7 100.0
Public Domain and Genome References
Ensembl Y59A8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14406 Hypothetical protein Y59A8B.1a [Caenorhabditis elegans] ref|NP_001024266.1| DumPY : shorter than wild-type family member (dpy-21) [Caenorhabditis elegans] 0.0
blast CAC14406 Hypothetical protein Y59A8B.1a [Caenorhabditis elegans] ref|NP_001024266.1| DumPY : shorter than wild-type family member (dpy-21) [Caenorhabditis elegans] 1.0E-178
blast CAE61695 Hypothetical protein CBG05643 [Caenorhabditis briggsae] 3.0E-89
blast CAE61695 Hypothetical protein CBG05643 [Caenorhabditis briggsae] 3.0E-87
blast XP_614755 PREDICTED: similar to round spermatid basic protein 1-like isoform 1 [Bos taurus] 2.0E-71
blast XP_614755 PREDICTED: similar to round spermatid basic protein 1-like isoform 1 [Bos taurus] 5.0E-69
Sequence
Target Sequence 
>C. ELEGANS:182830_AT
tggcgacacgtggcaacgatcgacgtgaaactgcatttaatgatcgaacaaatgcgcacg
cagatcaagtgcgtgaatcaactgaagatgatccaacaacaacaacaacaactacaacga
ctacaagttcttcttcttcttcttcaaaatcgaaaaaatcggcgaaatccgatccgacat
ttgttaaatcaacggctgctgtgggtgtcctacagggtatcaggaatcctgatgcaaatg
acgatgatgaatattatgaggatgaacgaaaagctgttaaagaagttattgtatttgatg
cacatgatttgcataaagttgcacatcatcttgcaatggatctctacgaaccgcccgttt
ctcagtgtcacagatgggtcgacgatgcgattttgaacacgatgcgacgagagggtattc
gatatgcaaaacttgaactccacgagaacgacatgtacttcctgccacgtaacgtaatcc
atcaattccgtacagtttccgcgtgcagttcggtagcctggcacgtccgtctacgtcact
attacgatgtagatcaaccggcgtcgttgtcggatcctcaattcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGACACGTGGCAACGATCGACG 616 543 4310 Antisense
CAACGACTACAAGTTCTTCTTCTTC 377 187 4424 Antisense
AAATCAACGGCTGCTGTGGGTGTCC 387 115 4495 Antisense
TTGCAATGGATCTCTACGAACCGCC 512 699 4640 Antisense
CGAGAACGACATGTACTTCCTGCCA 168 251 4752 Antisense
GTACTTCCTGCCACGTAACGTAATC 216 459 4764 Antisense
AATCCATCAATTCCGTACAGTTTCC 683 165 4785 Antisense
TACAGTTTCCGCGTGCAGTTCGGTA 102 643 4800 Antisense
CGTCCGTCTACGTCACTATTACGAT 669 245 4833 Antisense
TAGATCAACCGGCGTCGTTGTCGGA 5 651 4859 Antisense
GTCGTTGTCGGATCCTCAATTCGAA 18 471 4872 Antisense
Sequence Source Affymetrix Proprietary Database