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[182829_at]

Description F31D5.6 /REP_DB=WormBase Gene ID /WP=CE19829 /TR=Q9TXH3 /GB=AAC71104.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 3.5
(-3)
A 		29.2
(-0.2)
A 		7.7
(-2.5)
A 		59.4
(3)
P 		56
B 18.5
(-0.3)
A 		30.1
(2.2)
A 		33.6
(3)
A 		6.2
(-3)
A 		27
C 3.8
(-3)
A 		41
(0)
A 		23.2
(-1.4)
A 		78
(3)
M 		74
avr 8.6
(-3) 		33.4
(0.8) 		21.5
(-1) 		47.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 22.6
(0.2)
A 		13.8
(-1.3)
A 		36.5
(2.5)
A 		13.2
(-1.4)
A 		3.8
(-3)
A 		39.5
(3)
A 		36
B 14.5
(0.1)
A 		18
(1)
A 		12.4
(-0.4)
A 		2.3
(-3)
A 		18.5
(1.1)
A 		26
(3)
A 		24
C 26.2
(0.8)
A 		20.7
(-0.1)
A 		27.1
(0.9)
A 		13.3
(-1.3)
A 		2.8
(-3)
A 		39.8
(3)
A 		37
avr 21.1
(-0.1) 		17.5
(-1) 		25.3
(0.8) 		9.6
(-2.7) 		8.4
(-3) 		35.1
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.3
(-3)
A 		6.3
(1.1)
A 		2
(-2.4)
A 		8.7
(3)
P 		7
B 5.9
(1.2)
A 		7.4
(2.6)
A 		7.8
(3)
A 		1.3
(-3)
A 		7
C 1.3
(-3)
A 		11.8
(2.3)
A 		8.1
(0.5)
A 		13.1
(3)
M 		12
avr 2.8
(-3) 		8.5
(3) 		6
(0.4) 		7.7
(2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.2
(-0.8)
A 		4.9
(-0.3)
A 		7.9
(1.8)
A 		3.4
(-1.4)
A 		1.1
(-3)
A 		9.6
(3)
A 		9
B 5
(-0.1)
A 		6
(0.6)
A 		3
(-1.4)
A 		0.6
(-3)
A 		7.5
(1.5)
A 		9.7
(3)
A 		9
C 9.7
(1.3)
A 		6.3
(-0.4)
A 		6.9
(-0.1)
A 		2.7
(-2.1)
A 		0.9
(-3)
A 		13.3
(3)
A 		12
avr 6.3
(-0.2) 		5.7
(-0.6) 		5.9
(-0.4) 		2.2
(-3) 		3.2
(-2.3) 		10.9
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4954
Sequence Type Exemplar sequence
Representative Public ID F31D5.6 NCBI
Target Description F31D5.6 /REP_DB=WormBase Gene ID /WP=CE19829 /TR=Q9TXH3 /GB=AAC71104.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062339 NCBI Caenorhabditis elegans F31D5.6 (F31D5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000018603 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4211419:4213329:1 11/11 None
F31D5.6 ENSEMBL cdna:known chromosome:CEL140:II:4209778:4213329:1 gene:F31D5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018592 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4209776-4213328(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31D5.6
Entrez Gene 185153 Entrez gene
SwissProt Q9TXH3 EMBL-EBI
WormBase CE19829 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71104 Hypothetical protein F31D5.6 [Caenorhabditis elegans] ref|NP_494740.1| F31D5.6 [Caenorhabditis elegans] 0.0
blast AAC71104 Hypothetical protein F31D5.6 [Caenorhabditis elegans] ref|NP_494740.1| F31D5.6 [Caenorhabditis elegans] 1.0E-160
blast CAE66942 Hypothetical protein CBG12334 [Caenorhabditis briggsae] 3.0E-12
blast CAE66399 Hypothetical protein CBG11663 [Caenorhabditis briggsae] 3.0E-12
blast CAE66942 Hypothetical protein CBG12334 [Caenorhabditis briggsae] 4.0E-12
blast CAE66399 Hypothetical protein CBG11663 [Caenorhabditis briggsae] 4.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.6E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.6E-8
Sequence
Target Sequence 
>C. ELEGANS:182829_AT
aattgcaatgctttcttccattctccaaatctcaatagtgcgactatttgtgacacaaac
tgaccaaaacaagaatgcgattgccagtttaattgctggaccatcgacaaaatatcacat
aaccagattccgaggttttataacttcagaaaatgtatcattttttgaaaaatgcgccga
tgattgctttgaagacattcgaattgtttctgacggtggtactactttcccggtagctct
gttcttacaatatccttcactcaaaaaggtgagaaaatggtcactcagtttgagactttt
tccggatttgggacaagcggtgtgtcgaagatggatcaacacggatgccgaagttgattc
tacaatgacgttcaaaactgaaggatacgaaacactagatagttttgtcgcggaattaca
ggattttgtaatagtcgaacataccaacacagtcgtacggatccagatggaaaatcccga
aaaacacgttgttctaacagccaagtggtatcctcgtaatcttgctggaactctctttgg
atacggcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCAATGCTTTCTTCCATTCTC 341 179 423 Antisense
GAATGCGATTGCCAGTTTAATTGCT 304 331 495 Antisense
AAATGCGCCGATGATTGCTTTGAAG 606 119 592 Antisense
TCTGACGGTGGTACTACTTTCCCGG 62 607 631 Antisense
CCCGGTAGCTCTGTTCTTACAATAT 195 259 651 Antisense
GTTCTTACAATATCCTTCACTCAAA 162 443 663 Antisense
CAGTTTGAGACTTTTTCCGGATTTG 529 207 708 Antisense
ATACCAACACAGTCGTACGGATCCA 676 21 863 Antisense
ACAGCCAAGTGGTATCCTCGTAATC 109 107 919 Antisense
CTCGTAATCTTGCTGGAACTCTCTT 147 233 935 Antisense
TGGAACTCTCTTTGGATACGGCACT 329 547 948 Antisense
Sequence Source Affymetrix Proprietary Database