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[182828_at]

Description F10G2.4 /REP_DB=WormBase Gene ID /WP=CE09332 /TR=Q22954 /GB=AAG24058.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 40.8
(1.9)
A 		43.6
(2.4)
A 		10.1
(-3)
A 		47.6
(3)
A 		38
B 35
(1.4)
A 		44.1
(2.9)
A 		9
(-3)
A 		44.4
(3)
A 		35
C 35.7
(-1)
A 		80.5
(3)
A 		12.8
(-3)
A 		47
(0)
A 		68
avr 37.2
(0.5) 		56.1
(3) 		10.6
(-3) 		46.3
(1.7) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 26.3
(-2.1)
A 		13.4
(-2.6)
A 		62.4
(-0.5)
A 		5
(-3)
A 		70.5
(-0.1)
A 		141.2
(3)
A 		136
B 54.9
(-1.4)
A 		34.2
(-2.2)
A 		14.6
(-3)
A 		44.6
(-1.8)
A 		56.5
(-1.3)
A 		162.3
(3)
M 		148
C 34.2
(-1.7)
A 		45
(-1.2)
A 		3.1
(-3)
A 		37.3
(-1.5)
A 		10
(-2.7)
A 		142.9
(3)
M 		140
avr 38.5
(-2.4) 		30.9
(-2.8) 		26.7
(-3) 		29
(-2.9) 		45.7
(-2.1) 		148.8
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.8
(3)
A 		9.5
(0.4)
A 		2.6
(-3)
A 		7
(-0.8)
A 		12
B 11.1
(3)
A 		10.9
(2.9)
A 		2.1
(-3)
A 		9.5
(1.9)
A 		9
C 11.8
(-0.7)
A 		23.2
(3)
A 		4.5
(-3)
A 		7.9
(-1.9)
A 		19
avr 12.6
(2) 		14.5
(3) 		3.1
(-3) 		8.1
(-0.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 4.8
(-2.4)
A 		4.8
(-2.4)
A 		13.6
(-0.8)
A 		1.3
(-3)
A 		21.3
(0.6)
A 		34.4
(3)
A 		33
B 19.1
(-1.4)
A 		11.4
(-2.2)
A 		3.5
(-3)
A 		11.8
(-2.1)
A 		23
(-0.9)
A 		60.5
(3)
M 		57
C 12.7
(-1.5)
A 		13.7
(-1.4)
A 		0.8
(-3)
A 		7.5
(-2.1)
A 		3.3
(-2.7)
A 		47.8
(3)
M 		47
avr 12.2
(-2.1) 		10
(-2.4) 		6
(-3) 		6.9
(-2.9) 		15.9
(-1.6) 		47.6
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182828_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11990
Sequence Type Exemplar sequence
Representative Public ID F10G2.4 NCBI
Target Description F10G2.4 /REP_DB=WormBase Gene ID /WP=CE09332 /TR=Q22954 /GB=AAG24058.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072463 NCBI Caenorhabditis elegans F10G2.4 (F10G2.4) mRNA, complete cds. 11/11 None
SNAP00000010637 ENSEMBL cdna:SNAP chromosome:CEL140:V:7329821:7330348:1 11/11 None
GENEFINDER00000010647 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7329821:7330348:1 11/11 None
F10G2.4 ENSEMBL cdna:known chromosome:CEL140:V:7329821:7330348:1 gene:F10G2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7329821-7330349(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10G2.4
Entrez Gene 184315 Entrez gene
SwissProt Q22954 EMBL-EBI
WormBase CE09332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504864 F10G2.4 [Caenorhabditis elegans] gb|AAG24058.1| Hypothetical protein F10G2.4 [Caenorhabditis elegans] 4.0E-80
Sequence
Target Sequence 
>C. ELEGANS:182828_AT
gactttctacgatgctcaattttcaatgagttctctgaaacaagtctcccccatttctgg
atccccacaacgtgatgattcatttaatatctcaccagcgagctcttcaccggatatgct
agttgaaacctggaaatctgacgaagaaaatgctaaatctgaatcaccatcttctcaaag
cacaactgcaacttcaacaaatgatgacctatttgcaagtgtcggaacgtgggaggtaca
tgccaatgagaacaacatcacagtcaataagaagaagaaacgttcccggaagatccgtcg
tctgcgagatgtacaggattcagatgaagagaggccaaaaccagttattgctcttgttcc
gttggttccaaacccattctgtgttagtgactcgcttctttcaaagttgggtcctgttgc
caccaagcgtagacgagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTCTACGATGCTCAATTTTCA 87 373 54 Antisense
GAGTTCTCTGAAACAAGTCTCCCCC 83 399 81 Antisense
TTTCTGGATCCCCACAACGTGATGA 136 669 107 Antisense
TAATATCTCACCAGCGAGCTCTTCA 427 635 138 Antisense
GAGCTCTTCACCGGATATGCTAGTT 21 389 153 Antisense
GAAGATCCGTCGTCTGCGAGATGTA 473 337 342 Antisense
AAACCAGTTATTGCTCTTGTTCCGT 283 125 391 Antisense
GTTCCAAACCCATTCTGTGTTAGTG 252 441 418 Antisense
TGTGTTAGTGACTCGCTTCTTTCAA 208 555 433 Antisense
TTCAAAGTTGGGTCCTGTTGCCACC 56 683 453 Antisense
TGTTGCCACCAAGCGTAGACGAGTT 441 561 468 Antisense
Sequence Source Affymetrix Proprietary Database