[Home] | [Total List]

[182827_at]

Description W03B1.6 /REP_DB=WormBase Gene ID /WP=CE14498 /TR=O45883 /GB=AAC24434.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 36      4grp_high_8_8 > 45      6grp_total > 36      4grp_total > 42      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 67.1
(-1.7)
P 		215.9
(3)
P 		105.7
(-0.5)
P 		27.8
(-3)
A 		188
B 63.7
(-2.9)
A 		217.9
(3)
P 		145.5
(0.2)
P 		60.5
(-3)
P 		157
C 35.1
(-3)
A 		171.6
(3)
P 		136.6
(1.5)
P 		101.7
(-0.1)
A 		137
avr 55.3
(-3) 		201.8
(3) 		129.3
(0) 		63.3
(-2.7) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 112.5
(1.1)
P 		153
(3)
P 		89.2
(-0)
P 		57.4
(-1.5)
P 		25.6
(-3)
A 		130.6
(1.9)
P 		127
B 131.9
(3)
P 		130
(2.9)
P 		81.4
(0.3)
P 		20.3
(-3)
A 		23.1
(-2.8)
A 		80.5
(0.2)
P 		112
C 158.6
(3)
P 		134.8
(1.7)
P 		71.1
(-1.6)
P 		81.8
(-1.1)
M 		45
(-3)
P 		102.2
(0)
P 		114
avr 134.3
(2.7) 		139.3
(3) 		80.6
(-0.3) 		53.2
(-1.8) 		31.2
(-3) 		104.4
(1.1) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 24.4
(-0.2)
P 		46.9
(3)
P 		27.6
(0.3)
P 		4.1
(-3)
A 		43
B 20.3
(-1.9)
A 		53.8
(3)
P 		33.7
(0.1)
P 		12.9
(-3)
P 		41
C 11.6
(-3)
A 		49.3
(3)
P 		47.6
(2.7)
P 		17.2
(-2.1)
A 		38
avr 18.8
(-1.8) 		50
(3) 		36.3
(0.9) 		11.4
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 20.7
(-1.3)
P 		54.4
(3)
P 		19.4
(-1.5)
P 		14.5
(-2.1)
P 		7.7
(-3)
A 		31.8
(0.1)
P 		47
B 45.9
(3)
P 		43.3
(2.6)
P 		19.8
(-0.9)
P 		5.4
(-3)
A 		9.4
(-2.4)
A 		30
(0.6)
P 		41
C 58.8
(3)
P 		41.1
(0.6)
P 		18.1
(-2.5)
P 		16.4
(-2.8)
M 		14.6
(-3)
P 		34.2
(-0.3)
P 		44
avr 41.8
(2.2) 		46.3
(3) 		19.1
(-1.6) 		12.1
(-2.7) 		10.6
(-3) 		32
(0.6) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182827_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10818
Sequence Type Exemplar sequence
Representative Public ID W03B1.6 NCBI
Target Description W03B1.6 /REP_DB=WormBase Gene ID /WP=CE14498 /TR=O45883 /GB=AAC24434.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068144 NCBI Caenorhabditis elegans W03B1.6 (W03B1.6) mRNA, complete cds. 11/11 None
SNAP00000035758 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4338327:4343534:1 11/11 None
GENEFINDER00000035768 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4338615:4341257:1 11/11 None
W03B1.6 ENSEMBL cdna:known chromosome:CEL140:IV:4339500:4341257:1 gene:W03B1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4339505-4341263(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03B1.6
Entrez Gene 189145 Entrez gene
SwissProt O45883 EMBL-EBI
WormBase CE34602 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24434 Hypothetical protein W03B1.6 [Caenorhabditis elegans] ref|NP_500545.2| W03B1.6 [Caenorhabditis elegans] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 1.0E-156
blast T32572 hypothetical protein F37C4.2 - Caenorhabditis elegans 1.0E-156
blast CAE65676 Hypothetical protein CBG10742 [Caenorhabditis briggsae] 1.0E-146
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 1.0E-146
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 1.0E-119
blast T32572 hypothetical protein F37C4.2 - Caenorhabditis elegans 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 4.4E-6
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.0E-37
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 4.9E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500545.2 1 21-43
W03B1.6 1 21-43
SNAP00000035758 3 53-75,85-104,111-130
GENEFINDER00000035768 3 31-53,115-132,139-161
Sequence
Target Sequence 
>C. ELEGANS:182827_AT
ttatcaggccaacagtattctacaaggatcgtttggatactgtgaagttttgtatccgac
aactctaagaccacattgtcatgcgaggtttattgactatgaacagcggatccgaagcga
gaagccggattatgcgtttgtacttgcaagatacttttctgtcggatccccggctcccaa
aaatgtgacaagcttcgatgatgacccgttttatcaagttatgaaagaacaaacgttgaa
acttttatctagtatcaaacataaaatgtatattcttgacgccttccctagtatcaacga
tctaggaatttcccaaatagcgcctatgttgaaagatggaaccgatcgagtgaagtttct
cttaaaaacgaaagaatatcaaaaggacgaagaaagttaccaaatggcgcggaaaagata
tgctcagctcgtgaaggattgcaatggaagatgtgttctgatagattatgcggagaaatt
ttacaatgcaacgactgggacttatcgattatttgatgagaaagggttcacatatttcac
ttcgggaacacatttatcgccacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCAGGCCAACAGTATTCTACAA 210 679 435 Antisense
GTATCCGACAACTCTAAGACCACAT 475 443 486 Antisense
AAGACCACATTGTCATGCGAGGTTT 172 155 501 Antisense
GCAAGATACTTTTCTGTCGGATCCC 569 321 580 Antisense
TCCCCGGCTCCCAAAAATGTGACAA 612 595 601 Antisense
GACAAGCTTCGATGATGACCCGTTT 244 365 621 Antisense
AAATGTATATTCTTGACGCCTTCCC 244 121 698 Antisense
GCCTTCCCTAGTATCAACGATCTAG 412 281 715 Antisense
GGAATTTCCCAAATAGCGCCTATGT 484 533 739 Antisense
AGGGTTCACATATTTCACTTCGGGA 84 59 957 Antisense
TTCGGGAACACATTTATCGCCACAT 269 695 975 Antisense
Sequence Source Affymetrix Proprietary Database