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[182826_at]

Description K05F6.6 /REP_DB=WormBase Gene ID /WP=CE17164 /TR=O44863 /GB=AAB95026.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 47.7
(3)
A 		33.5
(-2)
A 		30.5
(-3)
A 		43.9
(1.7)
A 		17
B 44.5
(-0.5)
A 		79.8
(3)
P 		54.4
(0.5)
A 		20
(-3)
A 		60
C 52.7
(-0.7)
A 		78.5
(3)
A 		37.1
(-3)
P 		50
(-1.1)
P 		41
avr 48.3
(-0.6) 		63.9
(3) 		40.7
(-2.4) 		38
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 46.8
(0.4)
A 		43.5
(-0.4)
A 		45.7
(0.1)
P 		58.2
(3)
P 		47.6
(0.6)
A 		31.9
(-3)
P 		26
B 46.9
(1.4)
A 		60.5
(3)
M 		49.4
(1.7)
A 		55.2
(2.4)
A 		45.3
(1.2)
A 		10.6
(-3)
A 		50
C 23.9
(-1.2)
M 		71.9
(3)
P 		3.7
(-3)
A 		56.9
(1.7)
M 		34.6
(-0.3)
A 		40.6
(0.2)
A 		68
avr 39.2
(-0.8) 		58.6
(3) 		32.9
(-2) 		56.8
(2.7) 		42.5
(-0.1) 		27.7
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 17.4
(3)
A 		7.3
(-2.5)
A 		8
(-2.1)
A 		6.4
(-3)
A 		11
B 14.2
(0.9)
A 		19.7
(3)
P 		12.6
(0.2)
A 		4.3
(-3)
A 		15
C 17.4
(0.8)
A 		22.6
(3)
A 		12.9
(-1.1)
P 		8.4
(-3)
P 		14
avr 16.3
(2.9) 		16.5
(3) 		11.2
(-0.1) 		6.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.6
(-2.4)
A 		15.5
(3)
A 		10
(-1.3)
P 		14.8
(2.5)
P 		14.4
(2.1)
A 		7.8
(-3)
P 		8
B 16.3
(1.6)
A 		20.1
(3)
M 		12
(-0)
A 		14.6
(1)
A 		18.4
(2.4)
A 		3.9
(-3)
A 		16
C 8.9
(-0.7)
M 		21.9
(3)
P 		0.9
(-3)
A 		11.4
(0)
M 		11.2
(-0.1)
A 		13.6
(0.6)
A 		21
avr 11.3
(-1.1) 		19.2
(3) 		7.6
(-3) 		13.6
(0.1) 		14.7
(0.7) 		8.4
(-2.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4827
Sequence Type Exemplar sequence
Representative Public ID K05F6.6 NCBI
Target Description K05F6.6 /REP_DB=WormBase Gene ID /WP=CE17164 /TR=O44863 /GB=AAB95026.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061592(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061592 NCBI Caenorhabditis elegans K05F6.6 (K05F6.6) mRNA, complete cds. 11/11 None
K05F6.6 ENSEMBL cdna:known chromosome:CEL140:II:1547066:1549958:-1 gene:K05F6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019316 8/11 Cross Hyb Matching Probes None
GENEFINDER00000019338 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1547064-1549957(-) 97.22 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F6.6
Entrez Gene 187036 Entrez gene
SwissProt O44863 EMBL-EBI
WormBase CE17164 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB95026 Hypothetical protein K05F6.6 [Caenorhabditis elegans] ref|NP_493993.1| K05F6.6 [Caenorhabditis elegans] 0.0
blast AAB37955 Hypothetical protein ZC239.15 [Caenorhabditis elegans] ref|NP_494481.1| ZC239.15 [Caenorhabditis elegans] 4.0E-24
blast AAB95030 Hypothetical protein K05F6.9 [Caenorhabditis elegans] ref|NP_493999.1| K05F6.9 [Caenorhabditis elegans] 1.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.1E-10
Sequence
Target Sequence 
>C. ELEGANS:182826_AT
gaaggattctttagcgacctctttgaaactgatgctccggtttgttttgagctcacccag
ctttctagtaatttcaaaaatttccagctcgaaaaagacgatgccggatgtattttcatt
gaccgctcccacaaacactttgacctgatcctcaacttcatgagagatggccacgtggca
atcgccaacgatcataaggaaaaggacgcagatttcctgcaaattcttgctgatcagcag
aagccgattttggtgatcttgtatcttggcgaattgtgtccaatgccttttggtttttct
ccgtacgagttcattgatgagcactcccatcaattcgatatttatttcaaaagaactgaa
gtgcacagtgagtggaatgctgaaattattccaaaaaacggatcatatccagtctatgtt
gactttccgttcgaagctagatcttacaccccctctcacggatacaaacctgccacatat
tcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGATTCTTTAGCGACCTCTTTG 228 335 940 Antisense
GACCTCTTTGAAACTGATGCTCCGG 223 383 955 Antisense
GCTCCGGTTTGTTTTGAGCTCACCC 117 299 973 Antisense
CTCACCCAGCTTTCTAGTAATTTCA 11 229 991 Antisense
GCCACGTGGCAATCGCCAACGATCA 261 279 1109 Antisense
GGCGAATTGTGTCCAATGCCTTTTG 443 541 1207 Antisense
GGTTTTTCTCCGTACGAGTTCATTG 465 503 1231 Antisense
TGAGCACTCCCATCAATTCGATATT 21 569 1257 Antisense
GTCTATGTTGACTTTCCGTTCGAAG 472 449 1351 Antisense
CGTTCGAAGCTAGATCTTACACCCC 469 247 1367 Antisense
GATACAAACCTGCCACATATTCGGA 344 423 1400 Antisense
Sequence Source Affymetrix Proprietary Database