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[182825_at] 7TM chemoreceptor, srt family

Description C24B9.2 /REP_DB=WormBase Gene ID /WP=CE17444 /TR=O76432 /GB=AAC19253.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 04      6grp_cgc > 40      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 11.7
(-1.8)
A 		1.2
(-3)
A 		3.7
(-2.7)
A 		52.5
(3)
A 		51
B 32.6
(1.2)
A 		1.8
(-3)
A 		24.4
(0.1)
A 		45.8
(3)
A 		44
C 28.1
(-1.5)
A 		35.9
(-0.8)
A 		12.5
(-3)
A 		75.5
(3)
A 		63
avr 24.1
(-1.5) 		13
(-3) 		13.5
(-2.9) 		57.9
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 19.8
(2.3)
A 		5
(-1.9)
A 		22.1
(2.9)
A 		1
(-3)
A 		14.6
(0.8)
A 		22.4
(3)
A 		21
B 36.1
(3)
A 		25.3
(1.1)
A 		9.3
(-1.8)
A 		20.6
(0.2)
A 		3.6
(-2.8)
A 		2.3
(-3)
A 		34
C 3.9
(-2.9)
A 		24
(2)
A 		4.4
(-2.8)
A 		28.1
(3)
A 		9.8
(-1.5)
A 		3.6
(-3)
A 		25
avr 19.9
(3) 		18.1
(2) 		11.9
(-1.5) 		16.6
(1.1) 		9.3
(-3) 		9.4
(-2.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.3
(0.2)
A 		0.3
(-3)
A 		1
(-2.4)
A 		7.7
(3)
A 		7
B 10.4
(3)
A 		0.4
(-3)
A 		5.7
(0.2)
A 		9.8
(2.6)
A 		10
C 9.3
(0.6)
A 		10.3
(1.3)
A 		4.3
(-3)
A 		12.7
(3)
A 		8
avr 8
(1) 		3.7
(-3) 		3.7
(-3) 		10.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.6
(0.8)
A 		1.8
(-1.3)
A 		4.8
(2.2)
A 		0.3
(-3)
A 		4.4
(1.7)
A 		5.5
(3)
A 		5
B 12.6
(3)
A 		8.4
(0.8)
A 		2.3
(-2.3)
A 		5.4
(-0.7)
A 		1.5
(-2.7)
A 		0.9
(-3)
A 		12
C 1.4
(-2.7)
A 		7.3
(3)
A 		1.1
(-3)
A 		5.7
(1.5)
A 		3.2
(-1)
A 		1.2
(-2.9)
A 		6
avr 5.9
(3) 		5.8
(2.8) 		2.7
(-2.6) 		3.8
(-0.7) 		3
(-2.1) 		2.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15625
Sequence Type Exemplar sequence
Representative Public ID C24B9.2 NCBI
Target Description C24B9.2 /REP_DB=WormBase Gene ID /WP=CE17444 /TR=O76432 /GB=AAC19253.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071335 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-26) (srt-26) mRNA, complete cds. 11/11 None
C24B9.2 ENSEMBL cdna:known chromosome:CEL140:V:2715101:2716827:1 gene:C24B9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038276 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2715100-2716827(+) 99.35 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-26
Ensembl C24B9.2
Entrez Gene 182837 Entrez gene
SwissProt O76432 EMBL-EBI
WormBase CE37956 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19253 Serpentine receptor, class t protein 26 [Caenorhabditis elegans] ref|NP_503736.2| Serpentine Receptor, class T family member (srt-26) [Caenorhabditis elegans] 1.0E-146
blast CAE66090 Hypothetical protein CBG11307 [Caenorhabditis briggsae] 3.0E-97
blast AAB18286 Serpentine receptor, class t protein 25 [Caenorhabditis elegans] ref|NP_505127.2| Serpentine Receptor, class T family member (srt-25) [Caenorhabditis elegans] 3.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 4.7E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503736.2 7 20-40,53-75,90-112,133-155,181-203,223-245,260-279
C24B9.2 7 20-40,53-75,90-112,133-155,181-203,223-245,260-279
Sequence
Target Sequence 
>C. ELEGANS:182825_AT
gttcgtgtcttttaaacatcttgctgttggttaatagaaccttgaattttgccaattcca
agttaagcgactactttttcgatggatatcggacatacgtttttatcgtgattcccatag
tatatggtctatattttgttttttttacgccaacttgcgtattttcatccagatattatg
cctggttttacgacccattcatttttccaaatatgacttcagaggttcgtaatttagatt
tttttttaaatatgttaaagtatactaatgtgccacatggtgtcaacaatgtgatgataa
tcattggaacttcgactttctatgcttacatttgtattcttttatataaagcccgtaaaa
caggaagtttttcaagcaaatcaaataaatcaaatcaatcagttgtgatttgcttcatca
atcagatttttgcaagtatctacgttgtaatgaactttgtcatggttccagaatggatga
tagttctggcacaactactttggcagttagatcacggaatgccagttattatatacctaa
ccataaacgctacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGTGTCTTTTAAACATCTTGCT 216 443 314 Antisense
GTTAAGCGACTACTTTTTCGATGGA 509 445 375 Antisense
CATACGTTTTTATCGTGATTCCCAT 144 213 407 Antisense
GCCAACTTGCGTATTTTCATCCAGA 176 279 462 Antisense
TATGCCTGGTTTTACGACCCATTCA 596 657 490 Antisense
TACGACCCATTCATTTTTCCAAATA 65 647 502 Antisense
AATGTGCCACATGGTGTCAACAATG 65 165 580 Antisense
GGAACTTCGACTTTCTATGCTTACA 533 529 619 Antisense
GTTCTGGCACAACTACTTTGGCAGT 432 443 796 Antisense
GTTAGATCACGGAATGCCAGTTATT 323 443 819 Antisense
TATACCTAACCATAAACGCTACGAT 478 657 845 Antisense
Sequence Source Affymetrix Proprietary Database