[Home] | [Total List]

[182824_at]

Description C32E8.5 /REP_DB=WormBase Gene ID /WP=CE08529 /TR=P91125 /GB=AAB42323.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 87      6grp_total > 67      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 658
1 2 3 4 range
A 962.4
(3)
P 		557.3
(-3)
P 		697.3
(-0.9)
P 		952.1
(2.8)
P 		405
B 837.5
(-1.6)
P 		724
(-3)
P 		827.3
(-1.7)
P 		1214.8
(3)
P 		491
C 995.7
(3)
P 		721.5
(-3)
P 		746.4
(-2.5)
P 		847.5
(-0.2)
P 		274
avr 931.9
(1.7) 		667.6
(-3) 		757
(-1.4) 		1004.8
(3) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1044
1 2 3 4 5 6 range
A 1002.2
(-1.2)
P 		840.2
(-3)
P 		1040.9
(-0.8)
P 		977.9
(-1.5)
P 		1047.7
(-0.7)
P 		1376.9
(3)
P 		537
B 897.3
(-3)
P 		929.7
(-2.8)
P 		1339.2
(-0.2)
P 		891.3
(-3)
P 		1089.4
(-1.8)
P 		1849
(3)
P 		958
C 805.4
(-3)
P 		1178.2
(-0.2)
P 		896.6
(-2.3)
P 		938.3
(-2)
P 		957.2
(-1.9)
P 		1608.5
(3)
P 		803
avr 901.6
(-3) 		982.7
(-2.3) 		1092.2
(-1.4) 		935.8
(-2.7) 		1031.4
(-1.9) 		1611.5
(3) 		710
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 350.4
(3)
P 		121
(-3)
P 		182.3
(-1.4)
P 		139.4
(-2.5)
P 		229
B 267.1
(3)
P 		178.8
(-3)
P 		191.7
(-2.1)
P 		258.9
(2.4)
P 		88
C 329.6
(3)
P 		207.4
(-0.9)
P 		260.1
(0.8)
P 		142.9
(-3)
P 		187
avr 315.7
(3) 		169.1
(-3) 		211.4
(-1.3) 		180.4
(-2.5) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 505
1 2 3 4 5 6 range
A 184.7
(-3)
P 		298.8
(1.5)
P 		226.7
(-1.3)
P 		248
(-0.5)
P 		316.1
(2.2)
P 		335.2
(3)
P 		151
B 312.2
(-2)
P 		309.4
(-2)
P 		325.2
(-1.8)
P 		236.1
(-3)
P 		442.6
(-0.3)
P 		689.5
(3)
P 		453
C 298.5
(-1.1)
P 		359.5
(-0.1)
P 		228.2
(-2.3)
P 		188.7
(-3)
P 		309.8
(-0.9)
P 		538.4
(3)
P 		350
avr 265.1
(-2.2) 		322.6
(-1) 		260
(-2.3) 		224.3
(-3) 		356.2
(-0.3) 		521
(3) 		297
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.326
Sequence Type Exemplar sequence
Representative Public ID C32E8.5 NCBI
Target Description C32E8.5 /REP_DB=WormBase Gene ID /WP=CE08529 /TR=P91125 /GB=AAB42323.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058816 NCBI Caenorhabditis elegans C32E8.5 (C32E8.5) mRNA, complete cds. 11/11 None
SNAP00000040649 ENSEMBL cdna:SNAP chromosome:CEL140:I:3782139:3783182:1 11/11 None
GENEFINDER00000040659 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3782139:3783182:1 11/11 None
C32E8.5 ENSEMBL cdna:known chromosome:CEL140:I:3782120:3783262:1 gene:C32E8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3782138-3783182(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32E8.5
Entrez Gene 171946 Entrez gene
SwissProt P91125 EMBL-EBI
WormBase CE08529 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257092_AT forkhead-associated domain-containing protein / FHA domain-containing protein at
CANINE:1605150_AT similar to Smad nuclear interacting protein cfa
CANINE_2:CFA.20272.1.S1_AT similar to Smad nuclear interacting protein cfa
CANINE_2:CFAAFFX.5869.1.S1_S_AT similar to Smad nuclear interacting protein cfa
CHICKEN:GGA.13133.1.S1_AT Smad nuclear interacting protein 1 gga
HU35KSUBB:RC_AA157772_AT Smad nuclear interacting protein 1 hs
HU35KSUBD:RC_AA496258_AT Smad nuclear interacting protein 1 hs
HG-U133A:219409_AT Smad nuclear interacting protein 1 hs
HG-U133_PLUS_2:219409_AT Smad nuclear interacting protein 1 hs
HG-U133A_2:219409_AT Smad nuclear interacting protein 1 hs
U133_X3P:G13375986_3P_AT Smad nuclear interacting protein 1 hs
HG-U95B:49855_AT Smad nuclear interacting protein 1 hs
HG-U95C:60943_AT Smad nuclear interacting protein 1 hs
HG-U95D:71024_AT Smad nuclear interacting protein 1 hs
MG-U74AV2:104349_AT Smad nuclear interacting protein 1 mm
MOE430A:1428133_AT Smad nuclear interacting protein 1 mm
MOUSE430A_2:1428133_AT Smad nuclear interacting protein 1 mm
MOUSE430_2:1428133_AT Smad nuclear interacting protein 1 mm
MOE430B:1459773_X_AT Smad nuclear interacting protein 1 mm
MOUSE430_2:1459773_X_AT Smad nuclear interacting protein 1 mm
MU19KSUBC:TC36893_AT Smad nuclear interacting protein 1, mRNA (cDNA clone MGC:73648 IMAGE:949686) mm
MU19KSUBC:TC38780_AT Smad nuclear interacting protein 1, mRNA (cDNA clone MGC:73648 IMAGE:949686) mm
RG-U34C:RC_AI176598_AT similar to Smad nuclear interacting protein rn
RAE230B:1383231_AT similar to Smad nuclear interacting protein rn
RAT230_2:1383231_AT similar to Smad nuclear interacting protein rn
Protein Similarities
Method ID Description E-Value
blast AAB42323 Hypothetical protein C32E8.5 [Caenorhabditis elegans] ref|NP_491217.1| C32E8.5 [Caenorhabditis elegans] 1.0E-104
blast CAE66663 Hypothetical protein CBG12001 [Caenorhabditis briggsae] 6.0E-92
blast AAH59762 Hypothetical protein MGC75890 [Xenopus tropicalis] ref|NP_988890.1| hypothetical protein LOC394485 [Xenopus tropicalis] 2.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 1.3E-17
Sequence
Target Sequence 
>C. ELEGANS:182824_AT
tcagaaggccggatccagttcgagaagacggaaagcagtatggattggaaaagaaagaag
agaattggggaaagccagaggagccggcgaaggagaaagagaaagtgaatctggggacat
caggagccttgacagaggacacgaacacatttcgaggtgtcgttatcaagtataatgagc
ctccggaagcgaaaaaaccgaatgccaggtggagactgtacccattcaaaggagaagagt
cacttcaggttctttatattcatcgacagtctgcatatctcatcggaagagatcacaaga
ttgcagatattccagtggatcacccgagctgtagcaaacagcatgcagttctacaattca
gatcgatgccattcacccgagacgatggaactaaagctcgtcgaattatgccgtacatta
ttgatttgggaagtggaaatgggacgtttctgaacgagaaaaagatcgagcctcaaaggt
acattgaactacaagagaaggacatgctcaagtttggattctcgactcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGAAGGCCGGATCCAGTTCGAGA 179 623 299 Antisense
GGGGAAAGCCAGAGGAGCCGGCGAA 273 401 365 Antisense
GAATCTGGGGACATCAGGAGCCTTG 584 327 405 Antisense
GCCAGGTGGAGACTGTACCCATTCA 318 281 502 Antisense
GAGTCACTTCAGGTTCTTTATATTC 327 399 535 Antisense
GACAGTCTGCATATCTCATCGGAAG 202 369 563 Antisense
GTGGATCACCCGAGCTGTAGCAAAC 619 489 613 Antisense
AACAGCATGCAGTTCTACAATTCAG 404 135 635 Antisense
ATTCAGATCGATGCCATTCACCCGA 632 11 654 Antisense
AGCTCGTCGAATTATGCCGTACATT 688 77 693 Antisense
GCTCAAGTTTGGATTCTCGACTCGT 688 299 804 Antisense
Sequence Source Affymetrix Proprietary Database