[Home] | [Total List]

[182822_s_at]

Description B0286.4 /REP_DB=WormBase Gene ID /WP=CE03864 /TR=Q10923 /GB=AAA80691.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 40      6grp_total > 28      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 02      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 977
(3)
P 		627.7
(-3)
P 		697.7
(-1.8)
P 		971.1
(2.9)
P 		349
B 805.7
(-3)
P 		887.2
(3)
P 		837.9
(-0.6)
P 		827.1
(-1.4)
P 		82
C 941.3
(3)
P 		863.4
(-0.5)
P 		806.2
(-3)
P 		855.8
(-0.8)
P 		135
avr 908
(3) 		792.8
(-2.4) 		780.6
(-3) 		884.7
(1.9) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 704.4
(3)
P 		665.9
(1.7)
P 		658.1
(1.4)
P 		527
(-3)
P 		577.8
(-1.3)
P 		588.5
(-0.9)
P 		177
B 844.2
(3)
P 		647.3
(-0.3)
P 		524.2
(-2.3)
P 		484
(-3)
P 		570.7
(-1.6)
P 		546.2
(-2)
P 		360
C 846.4
(3)
P 		502.4
(-2.1)
P 		498.1
(-2.2)
P 		442.7
(-3)
P 		728.9
(1.3)
P 		544
(-1.5)
P 		404
avr 798.3
(3) 		605.2
(-0.7) 		560.1
(-1.6) 		484.6
(-3) 		625.8
(-0.3) 		559.6
(-1.6) 		314
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 355.7
(3)
P 		136.3
(-3)
P 		182.4
(-1.7)
P 		142.2
(-2.8)
P 		219
B 256.9
(3)
P 		219.1
(0.2)
P 		194.2
(-1.7)
P 		176.3
(-3)
P 		81
C 311.6
(3)
P 		248.2
(0.7)
P 		281
(1.9)
P 		144.3
(-3)
P 		167
avr 308.1
(3) 		201.2
(-1.2) 		219.2
(-0.5) 		154.3
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 129.8
(-3)
P 		236.8
(3)
P 		143.3
(-2.2)
P 		133.6
(-2.8)
P 		174.4
(-0.5)
P 		143.3
(-2.2)
P 		107
B 293.8
(3)
P 		215.5
(0.2)
P 		127.3
(-3)
P 		128.2
(-3)
P 		231.9
(0.8)
P 		203.7
(-0.2)
P 		167
C 313.7
(3)
P 		153.3
(-1.3)
P 		126.8
(-2)
P 		89
(-3)
P 		235.9
(0.9)
P 		182.1
(-0.5)
P 		225
avr 245.8
(3) 		201.9
(1) 		132.5
(-2.3) 		116.9
(-3) 		214.1
(1.5) 		176.4
(-0.2) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182822_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5385
Sequence Type Exemplar sequence
Representative Public ID B0286.4 NCBI
Target Description B0286.4 /REP_DB=WormBase Gene ID /WP=CE03864 /TR=Q10923 /GB=AAA80691.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062372(11), NM_062371(11), NM_062373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062372 NCBI Caenorhabditis elegans NOT-Like (yeast CCR4/NOT complex component) family member (ntl-2) (ntl-2) mRNA, complete cds. 11/11 None
NM_062371 NCBI Caenorhabditis elegans NOT-Like (yeast CCR4/NOT complex component) family member (ntl-2) (ntl-2) mRNA, complete cds. 11/11 None
NM_062373 NCBI Caenorhabditis elegans NOT-Like (yeast CCR4/NOT complex component) family member (ntl-2) (ntl-2) mRNA, complete cds. 11/11 None
SNAP00000035726 ENSEMBL cdna:SNAP chromosome:CEL140:II:4372940:4376393:-1 11/11 None
GENEFINDER00000035732 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4372940:4376301:-1 11/11 None
B0286.4b ENSEMBL cdna:known chromosome:CEL140:II:4372734:4375016:-1 gene:B0286.4 11/11 A 
B0286.4a.1 ENSEMBL cdna:known chromosome:CEL140:II:4372940:4376451:-1 gene:B0286.4 11/11 None
B0286.4a.2 ENSEMBL cdna:known chromosome:CEL140:II:4372940:4376735:-1 gene:B0286.4 11/11 None
B0286.4c.1 ENSEMBL cdna:known chromosome:CEL140:II:4372940:4375705:-1 gene:B0286.4 11/11 None
B0286.4c.2 ENSEMBL cdna:known chromosome:CEL140:II:4372940:4376451:-1 gene:B0286.4 11/11 None
B0286.4c.3 ENSEMBL cdna:known chromosome:CEL140:II:4372940:4376451:-1 gene:B0286.4 11/11 None
B0286.4c.4 ENSEMBL cdna:known chromosome:CEL140:II:4372940:4374692:-1 gene:B0286.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4372938-4375704(-) 99.33 99.33
Public Domain and Genome References
Ensembl B0286.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL11099 Not-like (yeast ccr4/not complex component) protein 2, isoform b [Caenorhabditis elegans] ref|NP_494773.1| NOT-Like (yeast CCR4/NOT complex component) family member (ntl-2) [Caenorhabditis elegans] 0.0
blast AAA80691 Not-like (yeast ccr4/not complex component) protein 2, isoform a [Caenorhabditis elegans] ref|NP_494772.1| NOT-Like (yeast CCR4/NOT complex component) family member (ntl-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007282 EMBL-EBI NOT2/NOT3/NOT5 5.4E-72
Pfam IPR007282 EMBL-EBI NOT2/NOT3/NOT5 5.4E-72
Pfam IPR007282 EMBL-EBI NOT2/NOT3/NOT5 5.4E-72
Pfam IPR007282 EMBL-EBI NOT2/NOT3/NOT5 5.4E-72
Sequence
Target Sequence 
>C. ELEGANS:182822_S_AT
aaggtgcccgaggagtacatgacgcataatcatattcgagacaaacttccaccgctgcga
ttgaataaagtttcagaagacgtgttattctatcttttttacaactgtccaaacgagatt
tatcaggtggcggcggcgtgcgaattgtacgctcgcgaatggcgatttcacaaaagcgaa
caggtgtggttgacgcgttctcagtacggtggagtgaaagaacagacgggaaattatgaa
aaagggcattacaacgtgttcgatcagatgcaatggcgaaaaattccgaaagagttaaag
ttggagtacaaagagctcgaggatcggccgaaaatgccgcaatcagtttccggacaaccg
acaccctacaaatactttttccaaggaccacaatttccgagcggtccggagacgggtctg
atgcttcagatgcataacttgacgctcggcacaggtggcggcggtggcggacaaatcact
ccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTGCCCGAGGAGTACATGACGC 646 157 745 Antisense
ACAAACTTCCACCGCTGCGATTGAA 80 113 785 Antisense
ATTCTATCTTTTTTACAACTGTCCA 385 11 831 Antisense
CGAGATTTATCAGGTGGCGGCGGCG 152 251 858 Antisense
GTACGCTCGCGAATGGCGATTTCAC 255 459 891 Antisense
GTTGACGCGTTCTCAGTACGGTGGA 551 425 933 Antisense
TGCCGCAATCAGTTTCCGGACAACC 708 583 1079 Antisense
CCAAGGACCACAATTTCCGAGCGGT 102 263 1125 Antisense
GTCCGGAGACGGGTCTGATGCTTCA 679 475 1148 Antisense
GATGCATAACTTGACGCTCGGCACA 300 413 1173 Antisense
GGCGGTGGCGGACAAATCACTCCAC 374 541 1204 Antisense
Sequence Source Affymetrix Proprietary Database