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[182820_at]

Description C54G10.1 /REP_DB=WormBase Gene ID /WP=CE05516 /TR=Q18842 /GB=CAA99809.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 23.7
(-3)
A 		58.3
(0.9)
A 		48.9
(-0.2)
A 		77.3
(3)
A 		54
B 55.4
(3)
A 		29.8
(-3)
A 		29.9
(-3)
A 		30.4
(-2.9)
A 		26
C 13.6
(-3)
A 		30.8
(-0.5)
A 		18.2
(-2.3)
A 		54.1
(3)
P 		41
avr 30.9
(-3) 		39.6
(-0.7) 		32.3
(-2.6) 		53.9
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 13.9
(-1.4)
A 		16.4
(-0.8)
A 		7.2
(-2.8)
A 		6.2
(-3)
A 		34.2
(3)
A 		17.9
(-0.5)
A 		28
B 18.7
(1)
A 		10.7
(-3)
A 		22.6
(3)
A 		16
(-0.3)
A 		20.9
(2.1)
A 		20.7
(2)
A 		12
C 28.6
(0.1)
M 		49.1
(3)
A 		26.1
(-0.3)
A 		13.3
(-2.2)
A 		8.6
(-2.8)
A 		7.4
(-3)
A 		42
avr 20.4
(0.8) 		25.4
(3) 		18.6
(0) 		11.8
(-3) 		21.2
(1.1) 		15.3
(-1.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.6
(-3)
A 		12.6
(2.7)
A 		12.8
(3)
A 		11.3
(0.9)
A 		4
B 17.7
(3)
A 		7.4
(-2.5)
A 		6.9
(-2.8)
A 		6.5
(-3)
A 		11
C 4.5
(-3)
A 		8.9
(2.7)
A 		6.4
(-0.5)
A 		9.1
(3)
P 		5
avr 10.3
(3) 		9.6
(0.4) 		8.7
(-3) 		9
(-1.9) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.6
(-2.3)
A 		5.8
(-0.1)
A 		1.6
(-3)
A 		1.6
(-3)
A 		10.3
(3)
A 		4.4
(-1.1)
A 		9
B 6.5
(0.6)
A 		3.6
(-3)
A 		5.5
(-0.7)
A 		4.2
(-2.3)
A 		8.5
(3)
A 		7.7
(2)
A 		5
C 10.6
(0.9)
M 		15
(3)
A 		6.6
(-1)
A 		2.7
(-2.9)
A 		2.8
(-2.9)
A 		2.5
(-3)
A 		13
avr 6.6
(1.3) 		8.1
(3) 		4.6
(-1) 		2.8
(-3) 		7.2
(2) 		4.9
(-0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182820_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13415
Sequence Type Exemplar sequence
Representative Public ID C54G10.1 NCBI
Target Description C54G10.1 /REP_DB=WormBase Gene ID /WP=CE05516 /TR=Q18842 /GB=CAA99809.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074217 NCBI Caenorhabditis elegans C54G10.1 (C54G10.1) mRNA, complete cds. 11/11 None
SNAP00000017884 ENSEMBL cdna:SNAP chromosome:CEL140:V:14643690:14643971:1 11/11 None
C54G10.1 ENSEMBL cdna:known chromosome:CEL140:V:14643690:14643971:1 gene:C54G10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14643689-14643971(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54G10.1
Entrez Gene 183818 Entrez gene
SwissProt Q18842 EMBL-EBI
WormBase CE05516 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99809 Hypothetical protein C54G10.1 [Caenorhabditis elegans] ref|NP_506618.1| C54G10.1 [Caenorhabditis elegans] 2.0E-49
Sequence
Target Sequence 
>C. ELEGANS:182820_AT
atgccagacatttccattatcctactaggcaactatgctcctgatcaagttattcacgcc
cgccttctcttcatgagaatggaacaagttcctggaggacatcacctccagattttgcag
ttccgattcactattcctttccgccaagccgacttctgctcgctggaccagagtgatgta
atgtgctccgagacacactgctactaccttatgaacttgaaagtgggagcattctttgag
accgctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAGACATTTCCATTATCCTAC 679 39 13 Antisense
ACTAGGCAACTATGCTCCTGATCAA 669 101 36 Antisense
TCCTGATCAAGTTATTCACGCCCGC 283 593 51 Antisense
GCCCGCCTTCTCTTCATGAGAATGG 482 285 70 Antisense
ACAAGTTCCTGGAGGACATCACCTC 251 113 96 Antisense
TCACCTCCAGATTTTGCAGTTCCGA 126 625 114 Antisense
TTTGCAGTTCCGATTCACTATTCCT 114 669 126 Antisense
ACTTCTGCTCGCTGGACCAGAGTGA 515 103 164 Antisense
GAGTGATGTAATGTGCTCCGAGACA 454 401 183 Antisense
GACACACTGCTACTACCTTATGAAC 1 367 204 Antisense
GGGAGCATTCTTTGAGACCGCTCAA 539 495 237 Antisense
Sequence Source Affymetrix Proprietary Database