[Home] | [Total List]

[182819_at]

Description F13H8.8 /REP_DB=WormBase Gene ID /WP=CE02642 /TR=Q19432 /GB=AAK31489.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 32.4
(-1.8)
A 		18.6
(-3)
A 		19
(-3)
A 		87.2
(3)
P 		69
B 18.3
(-3)
A 		22.6
(-2)
A 		37.5
(1.3)
A 		45
(3)
A 		27
C 37.6
(3)
A 		26.2
(-1.8)
A 		23.4
(-3)
A 		30.6
(0)
A 		14
avr 29.4
(-1.7) 		22.5
(-3) 		26.6
(-2.2) 		54.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 37.6
(-1.1)
A 		12
(-3)
A 		34.7
(-1.3)
A 		31.4
(-1.6)
A 		56
(0.2)
P 		94.4
(3)
P 		82
B 32.3
(-3)
A 		37.1
(-1.7)
A 		34.1
(-2.5)
P 		54.7
(3)
P 		32.3
(-3)
A 		52.6
(2.4)
P 		22
C 57.5
(1.6)
P 		35.8
(-0.5)
M 		8.8
(-3)
A 		10.6
(-2.8)
A 		34.7
(-0.6)
A 		73
(3)
P 		64
avr 42.5
(-0.9) 		28.3
(-2.7) 		25.9
(-3) 		32.2
(-2.2) 		41
(-1.1) 		73.3
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 11.8
(2.3)
A 		4
(-3)
A 		5
(-2.3)
A 		12.8
(3)
P 		9
B 5.8
(-2.7)
A 		5.6
(-3)
A 		8.7
(1.7)
A 		9.6
(3)
A 		4
C 12.5
(3)
A 		7.5
(-1.1)
A 		8.2
(-0.5)
A 		5.2
(-3)
A 		7
avr 10
(3) 		5.7
(-3) 		7.3
(-0.8) 		9.2
(1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.9
(-2.2)
A 		4.3
(-3)
A 		7.6
(-1.9)
A 		8
(-1.8)
A 		16.9
(1)
P 		23
(3)
P 		19
B 11.2
(-1.5)
A 		12.3
(-0.9)
A 		8.3
(-3)
P 		14.5
(0.3)
P 		13.1
(-0.5)
A 		19.6
(3)
P 		11
C 21.3
(2.2)
P 		10.9
(-0.6)
M 		2.2
(-3)
A 		2.1
(-3)
A 		11.2
(-0.6)
A 		24.4
(3)
P 		22
avr 13.1
(-0.4) 		9.2
(-1.8) 		6
(-3) 		8.2
(-2.2) 		13.7
(-0.2) 		22.3
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182819_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4260
Sequence Type Exemplar sequence
Representative Public ID F13H8.8 NCBI
Target Description F13H8.8 /REP_DB=WormBase Gene ID /WP=CE02642 /TR=Q19432 /GB=AAK31489.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062854(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062854 NCBI Caenorhabditis elegans F13H8.8 (F13H8.8) mRNA, complete cds. 11/11 None
SNAP00000031305 ENSEMBL cdna:SNAP chromosome:CEL140:II:6265695:6267571:-1 11/11 None
F13H8.8 ENSEMBL cdna:known chromosome:CEL140:II:6265598:6267571:-1 gene:F13H8.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031312 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6265691-6267568(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13H8.8
Entrez Gene 184439 Entrez gene
SwissProt Q19432 EMBL-EBI
WormBase CE35477 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31489 Hypothetical protein F13H8.8 [Caenorhabditis elegans] ref|NP_495255.2| F13H8.8 [Caenorhabditis elegans] 0.0
blast CAE69272 Hypothetical protein CBG15325 [Caenorhabditis briggsae] 4.0E-66
blast CAE69272 Hypothetical protein CBG15325 [Caenorhabditis briggsae] 6.0E-59
blast CAA98136 Hypothetical protein M117.4 [Caenorhabditis elegans] ref|NP_502238.1| M117.4 [Caenorhabditis elegans] 4.0E-39
blast CAA98136 Hypothetical protein M117.4 [Caenorhabditis elegans] ref|NP_502238.1| M117.4 [Caenorhabditis elegans] 2.0E-33
Sequence
Target Sequence 
>C. ELEGANS:182819_AT
ttttcttccggatccacatcaaatcttcaacgaagacgaatggaagcttcgaatgaaaaa
tctgaaatgcgaacgggaagatattttcattaataatcggccattctggattaatcgaac
caaggaagatgtgattccaaaatgcaagctgattgcacattctggactggtaaccgagta
caccctgaatgcttccaactttatgaaggaagttccaagacgatcattttatgatccaag
aagagatccgatggagaagtttatggcagttgataaagttattggagttgatccgtcgga
tgttggcaaggagaaagaattgaaaagaatcgtttcgaataccttttatggtacttgcag
tgtgcacgcatatcgcagaagtgaagttggcaagaagaaagtggatgactttgagatgaa
gatatcgactgctgaagagaagaagttgagctgtgaagcaccgaaagtttcatttcaatt
agccgataaatcgctgcaattgaatgtctataatcggcaatttgataacatttggaaact
atttttacatttatattttcagaaaagaacggccaaatactggagattctcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTTCCGGATCCACATCAAATC 598 675 900 Antisense
ATCGGCCATTCTGGATTAATCGAAC 297 33 995 Antisense
GCTGATTGCACATTCTGGACTGGTA 617 293 1047 Antisense
TGGACTGGTAACCGAGTACACCCTG 107 513 1062 Antisense
ACACCCTGAATGCTTCCAACTTTAT 177 109 1079 Antisense
GGAAGTTCCAAGACGATCATTTTAT 347 531 1107 Antisense
TGATCCGTCGGATGTTGGCAAGGAG 65 565 1188 Antisense
GAATCGTTTCGAATACCTTTTATGG 484 329 1226 Antisense
CTTGCAGTGTGCACGCATATCGCAG 57 215 1253 Antisense
GAAGTTGAGCTGTGAAGCACCGAAA 518 337 1341 Antisense
CGGCCAAATACTGGAGATTCTCGGA 49 243 1469 Antisense
Sequence Source Affymetrix Proprietary Database