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[182818_at] 7TM chemoreceptor, srw family

Description T05G11.7 /REP_DB=WormBase Gene ID /WP=CE18935 /TR=Q9XTJ5 /GB=CAA19435.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 09      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 17.3
(-3)
A 		17.9
(-3)
A 		29
(-2.1)
A 		95
(3)
A 		78
B 20.7
(-2.5)
A 		37.3
(0.1)
A 		17.5
(-3)
A 		55.7
(3)
A 		38
C 2.7
(-3)
A 		11.4
(-2.3)
A 		23.6
(-1.4)
A 		79.7
(3)
P 		77
avr 13.6
(-3) 		22.2
(-2.2) 		23.4
(-2.1) 		76.8
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 19.6
(0.5)
A 		18
(0.2)
A 		33.1
(3)
A 		1.6
(-2.9)
A 		23.6
(1.2)
A 		1
(-3)
A 		32
B 17.2
(-0.1)
A 		27.7
(3)
A 		7.6
(-3)
A 		12.4
(-1.6)
A 		20.5
(0.9)
A 		18.7
(0.3)
A 		20
C 16
(-0.9)
A 		43.9
(3)
A 		13.7
(-1.2)
A 		23.3
(0.1)
A 		1
(-3)
A 		12.9
(-1.3)
A 		43
avr 17.6
(-0.9) 		29.9
(3) 		18.1
(-0.7) 		12.4
(-2.5) 		15
(-1.7) 		10.9
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.3
(-1.6)
A 		3.9
(-3)
A 		7.6
(-0.8)
A 		13.9
(3)
A 		10
B 6.6
(-1)
A 		9.2
(0.9)
A 		4
(-3)
A 		11.9
(3)
A 		8
C 0.9
(-3)
A 		3.3
(-1.8)
A 		8.2
(0.5)
A 		13.4
(3)
P 		13
avr 4.6
(-3) 		5.5
(-2.4) 		6.6
(-1.6) 		13.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.6
(-0.1)
A 		6.4
(2.3)
A 		7.2
(3)
A 		0.4
(-2.8)
A 		7.1
(2.9)
A 		0.2
(-3)
A 		7
B 6
(0.4)
A 		9.2
(3)
A 		1.8
(-3)
A 		3.3
(-1.8)
A 		8.3
(2.3)
A 		7
(1.2)
A 		7
C 5.9
(-0.4)
A 		13.4
(3)
A 		3.5
(-1.5)
A 		4.7
(-1)
A 		0.3
(-3)
A 		4.3
(-1.2)
A 		13
avr 5.2
(-0.9) 		9.7
(3) 		4.2
(-1.8) 		2.8
(-3) 		5.2
(-0.9) 		3.8
(-2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12930
Sequence Type Exemplar sequence
Representative Public ID T05G11.7 NCBI
Target Description T05G11.7 /REP_DB=WormBase Gene ID /WP=CE18935 /TR=Q9XTJ5 /GB=CAA19435.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074593 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-53) (srw-53) mRNA, complete cds. 11/11 None
SNAP00000020481 ENSEMBL cdna:SNAP chromosome:CEL140:V:15946346:15947257:1 9/11 None
T05G11.7 ENSEMBL cdna:known chromosome:CEL140:V:15946008:15947437:1 gene:T05G11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15946007-15947437(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-53
Ensembl T05G11.7
Entrez Gene 188147 Entrez gene
SwissProt Q9XTJ5 EMBL-EBI
WormBase CE18935 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19435 Hypothetical protein T05G11.7 [Caenorhabditis elegans] emb|CAA18359.1| Hypothetical protein T05G11.7 [Caenorhabditis elegans] ref|NP_506994.1| Serpentine Receptor, class W family member (srw-53) [Caenorhabditis elegans] 0.0
blast CAA19435 Hypothetical protein T05G11.7 [Caenorhabditis elegans] emb|CAA18359.1| Hypothetical protein T05G11.7 [Caenorhabditis elegans] ref|NP_506994.1| Serpentine Receptor, class W family member (srw-53) [Caenorhabditis elegans] 1.0E-100
blast CAA18357 Hypothetical protein H24D24.1 [Caenorhabditis elegans] ref|NP_506996.1| Serpentine Receptor, class W family member (srw-59) [Caenorhabditis elegans] 1.0E-61
blast CAE17829 Hypothetical protein F36G9.16 [Caenorhabditis elegans] ref|NP_001023889.1| Serpentine Receptor, class W family member (srw-56) [Caenorhabditis elegans] 1.0E-60
blast CAA18358 Hypothetical protein H24D24.2 [Caenorhabditis elegans] ref|NP_506995.1| Serpentine Receptor, class W family member (srw-58) [Caenorhabditis elegans] 2.0E-33
blast CAA18357 Hypothetical protein H24D24.1 [Caenorhabditis elegans] ref|NP_506996.1| Serpentine Receptor, class W family member (srw-59) [Caenorhabditis elegans] 8.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 2.7E-28
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 2.7E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506994.1 7 25-47,54-76,119-136,156-178,216-238,264-286,301-323
T05G11.7 7 25-47,54-76,119-136,156-178,216-238,264-286,301-323
SNAP00000020481 4 20-42,62-84,122-144,170-192
Sequence
Target Sequence 
>C. ELEGANS:182818_AT
tggagctcgtgttgttctactcatttgccttctacaactacctttctggattattgattt
tttgcaatatgaaattattgaatacgagctatggactattgcaacagattgtccaaacta
ttacaacaactccacacaagtggtctattttcaaaactttcggatgattgtaaatgccac
tgtacgtacaattcaaggacttttggtcacagcaataccctctattatgctagttgttgc
tacaggaatgttgatttatcagctcaagcgtattaagaaagtgacagttttgagaagctc
tcatggaaataatagccatgaaaaatctacaaaattggtgataactgtcactatatcatt
tataatatcaactgtaccaactggagtgtggtatcttattgaatacaaagctttcaatta
tggaacgattgtgcttattgtagacgagatttccgcattttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCTCGTGTTGTTCTACTCATT 335 549 468 Antisense
CCTTCTACAACTACCTTTCTGGATT 215 269 495 Antisense
TACGAGCTATGGACTATTGCAACAG 149 647 550 Antisense
AACTATTACAACAACTCCACACAAG 676 139 583 Antisense
CCACACAAGTGGTCTATTTTCAAAA 295 275 599 Antisense
GTAAATGCCACTGTACGTACAATTC 649 459 637 Antisense
GACTTTTGGTCACAGCAATACCCTC 660 369 665 Antisense
AATACCCTCTATTATGCTAGTTGTT 38 173 681 Antisense
ATCAACTGTACCAACTGGAGTGTGG 24 27 834 Antisense
GGAACGATTGTGCTTATTGTAGACG 628 529 889 Antisense
TGTAGACGAGATTTCCGCATTTTGT 164 561 906 Antisense
Sequence Source Affymetrix Proprietary Database