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[182817_at]

Description D2096.7 /REP_DB=WormBase Gene ID /WP=CE04305 /TR=Q19006 /GB=AAA81493.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 31      4grp_high_8_8 > 04      6grp_highest_nonorm > 72      6grp_total > 91      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 695
1 2 3 4 range
A 402.6
(-1.5)
P 		279.6
(-2.9)
P 		266.6
(-3)
P 		813.9
(3)
P 		547
B 459.2
(-1.2)
P 		367.1
(-2.2)
P 		299.4
(-3)
P 		839.1
(3)
P 		540
C 422.4
(-1.6)
P 		305.6
(-2.6)
P 		262
(-3)
P 		957.3
(3)
P 		695
avr 428.1
(-1.5) 		317.4
(-2.6) 		276
(-3) 		870.1
(3) 		594

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 506.1
(0.9)
P 		494.9
(0.6)
P 		318.4
(-3)
P 		441.8
(-0.5)
P 		609.9
(3)
P 		421.2
(-0.9)
P 		292
B 472.5
(2)
P 		412.2
(-0.4)
P 		347.3
(-3)
P 		498.1
(3)
P 		359.6
(-2.5)
P 		424
(0.1)
P 		151
C 483.8
(2.3)
P 		474.7
(2)
P 		481.5
(2.2)
P 		490.6
(2.5)
P 		507.6
(3)
P 		308
(-3)
P 		200
avr 487.5
(2.7) 		460.6
(1.3) 		382.4
(-3) 		476.8
(2.1) 		492.4
(3) 		384.4
(-2.9) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 146.6
(3)
P 		60.7
(-3)
P 		69.7
(-2.4)
P 		119.1
(1.1)
P 		86
B 146.4
(1.2)
P 		90.7
(-1.8)
P 		69.4
(-3)
P 		178.8
(3)
P 		109
C 139.8
(1.2)
P 		87.9
(-3)
P 		91.3
(-2.7)
P 		161.4
(3)
P 		74
avr 144.3
(2.3) 		79.8
(-2.8) 		76.8
(-3) 		153.1
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 93.3
(-1.7)
P 		176
(2.6)
P 		69.3
(-3)
P 		112.1
(-0.8)
P 		184
(3)
P 		102.6
(-1.3)
P 		115
B 164.4
(3)
P 		137.2
(1)
P 		84.3
(-3)
P 		131.9
(0.6)
P 		146.1
(1.6)
P 		158.1
(2.5)
P 		80
C 179.3
(3)
P 		144.8
(0.4)
P 		122.5
(-1.2)
P 		98.7
(-3)
P 		164.2
(1.9)
P 		103.1
(-2.7)
P 		81
avr 145.7
(1.4) 		152.7
(2) 		92
(-3) 		114.2
(-1.2) 		164.8
(3) 		121.3
(-0.6) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8662
Sequence Type Exemplar sequence
Representative Public ID D2096.7 NCBI
Target Description D2096.7 /REP_DB=WormBase Gene ID /WP=CE04305 /TR=Q19006 /GB=AAA81493.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069020
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025686 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8375573:8377404:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069020 8/11 Cross Hyb Matching Probes None
SNAP00000025673 8/11 Cross Hyb Matching Probes None
D2096.7 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8375578-8377618(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501421 D2096.7 [Caenorhabditis elegans] gb|AAA81493.2| Hypothetical protein D2096.7 [Caenorhabditis elegans] 1.0E-143
blast CAE73743 Hypothetical protein CBG21271 [Caenorhabditis briggsae] 9.0E-65
Sequence
Target Sequence 
>C. ELEGANS:182817_AT
caacaagttcaatattccatcccgtgtctgtgtttctcgaggccatgcatctcataagct
acgattgtgaagtagtaattgactggttgaattctgaattggcatcttcttcactgattc
tacgaattctaaaatcaaattgccatgacaaaaacagaaactgctggatgagttattccc
cgataatcaatgaagcagctctctccgatatccagcgaaaacaaatttctcctctgataa
aagctgcaccatcgatacagtaccctaaagtcacgcttaaaatcactgaaatcgtgggag
atcaagaaatgacaaaaacgatgaaattccaaggatctgaaagtaaacgcatgtgttcac
acaaacatccaacaattttaaagaatactggaagttttggaaaatgggttaacatggttg
tggaagtacgtgagcgattgaggagactgctttcagcaaaattacttccaaagaagtttg
atataattctaaagtgtcaacgatgtttgtgtttcgcggtatttataatagaaatagatt
gtacccatcccattgagagtgaaactcttttctatttacgcgcgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAAGTTCAATATTCCATCCCGT 86 189 515 Antisense
GAGGCCATGCATCTCATAAGCTACG 167 405 553 Antisense
TGAATTGGCATCTTCTTCACTGATT 690 575 609 Antisense
ACTGCTGGATGAGTTATTCCCCGAT 597 97 674 Antisense
AATCAATGAAGCAGCTCTCTCCGAT 507 171 699 Antisense
GCTCTCTCCGATATCCAGCGAAAAC 87 301 712 Antisense
TTCTCCTCTGATAAAAGCTGCACCA 478 693 741 Antisense
GATACAGTACCCTAAAGTCACGCTT 628 423 768 Antisense
GATGTTTGTGTTTCGCGGTATTTAT 490 409 1016 Antisense
ATTGTACCCATCCCATTGAGAGTGA 355 3 1052 Antisense
AACTCTTTTCTATTTACGCGCGATT 311 141 1077 Antisense
Sequence Source Affymetrix Proprietary Database