[Home] | [Total List]

[182816_s_at]

Description C04F5.9 /REP_DB=WormBase Gene ID /WP=CE19673 /TR=Q9GZC9 /GB=AAF98599.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 91      6grp_total > 74      4grp_total > 47      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 233
(3)
P 		150.9
(-1.3)
P 		118.3
(-3)
P 		156.9
(-1)
P 		115
B 279.4
(3)
P 		91
(-2.7)
P 		82
(-3)
P 		121.2
(-1.8)
P 		197
C 334.3
(3)
P 		137.9
(-3)
P 		228
(-0.2)
P 		171.7
(-2)
P 		196
avr 282.2
(3) 		126.6
(-3) 		142.8
(-2.4) 		149.9
(-2.1) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 72.2
(-3)
P 		216.2
(1.7)
P 		254.4
(3)
P 		248.6
(2.8)
P 		165.1
(0.1)
P 		221
(1.9)
P 		182
B 199
(1)
P 		178.4
(-0.2)
P 		125.7
(-3)
P 		236.8
(3)
P 		235.1
(2.9)
P 		218.5
(2)
P 		111
C 179.1
(-0.1)
P 		173.1
(-0.8)
P 		198.4
(2.1)
P 		154.4
(-3)
P 		201.5
(2.5)
P 		205.8
(3)
P 		51
avr 150.1
(-3) 		189.2
(0.6) 		192.8
(0.9) 		213.3
(2.8) 		200.6
(1.7) 		215.1
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 84.8
(3)
P 		32.8
(-2)
P 		30.9
(-2.2)
P 		23
(-3)
P 		62
B 89.1
(3)
P 		22.5
(-2.7)
P 		19
(-3)
P 		25.8
(-2.4)
P 		70
C 110.7
(3)
P 		39.6
(-2.2)
P 		79.5
(0.7)
P 		29
(-3)
P 		82
avr 94.9
(3) 		31.6
(-2.5) 		43.1
(-1.5) 		25.9
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 13.3
(-3)
P 		76.9
(3)
P 		55.4
(1)
P 		63
(1.7)
P 		49.8
(0.4)
P 		53.8
(0.8)
P 		64
B 69.2
(0.6)
P 		59.4
(-0.3)
P 		30.5
(-3)
P 		62.7
(-0)
P 		95.5
(3)
P 		81.5
(1.7)
P 		65
C 66.4
(2.6)
P 		52.8
(0.5)
P 		50.5
(0.1)
P 		31
(-3)
P 		65.2
(2.4)
P 		68.9
(3)
P 		38
avr 49.6
(-2) 		63
(1.3) 		45.5
(-3) 		52.2
(-1.4) 		70.2
(3) 		68.1
(2.5) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182816_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15649
Sequence Type Exemplar sequence
Representative Public ID C04F5.9 NCBI
Target Description C04F5.9 /REP_DB=WormBase Gene ID /WP=CE19673 /TR=Q9GZC9 /GB=AAF98599.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071970 NCBI Caenorhabditis elegans C04F5.9 (C04F5.9) mRNA, complete cds. 11/11 None
SNAP00000034407 ENSEMBL cdna:SNAP chromosome:CEL140:V:5111402:5118969:-1 9/11 None
GENEFINDER00000034413 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5114600:5115854:-1 11/11 None
C04F5.9 ENSEMBL cdna:known chromosome:CEL140:V:5114562:5119022:-1 gene:C04F5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5114599-5118969(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04F5.9
Entrez Gene 178899 Entrez gene
SwissProt Q9GZC9 EMBL-EBI
WormBase CE19673 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF98599 Hypothetical protein C04F5.9 [Caenorhabditis elegans] ref|NP_504371.1| C04F5.9 [Caenorhabditis elegans] 0.0
blast AAF98591 Hypothetical protein C04F5.8 [Caenorhabditis elegans] ref|NP_504370.1| C04F5.8 [Caenorhabditis elegans] 1.0E-152
blast CAE64075 Hypothetical protein CBG08678 [Caenorhabditis briggsae] 1.0E-144
blast CAE64077 Hypothetical protein CBG08681 [Caenorhabditis briggsae] 1.0E-135
blast AAF98599 Hypothetical protein C04F5.9 [Caenorhabditis elegans] ref|NP_504371.1| C04F5.9 [Caenorhabditis elegans] 1.0E-123
blast CAE64077 Hypothetical protein CBG08681 [Caenorhabditis briggsae] 2.0E-45
blast CAE56294 Hypothetical protein CBG23946 [Caenorhabditis briggsae] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:182816_S_AT
gcacctggatcgaactctttgagaataaaaaagcggcaaatttgaaattcataaaagaat
ttctcgatcaaattgatagaagaaaaccacatggttatgcatcatcacaaattgttctta
atagacccgttccggctcatagtattgaaattgacacgaaaatgaatagttgtcggttat
gtaaaataacattcaaatcgtctcgattcctctatcaacacgaacaaactgtccatcaaa
gggagccccccgttcatcgtaatcaactgacaatcactgccacctcacttctcccatatt
tcaaattccaagaggcaaaattctacgattcaagtggacaagaatatcgaatgggcaaat
atttggagaagaataatggaataaatgtatcgagaaatgtgaagaaacagaagaacaata
ttgtgacacttcacggaaatctgaaacagcatgttctactcacagatatggaatattcaa
tgttgcggaaccctgatggaagcctgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCTGGATCGAACTCTTTGAGAA 358 315 1046 Antisense
AACCACATGGTTATGCATCATCACA 69 149 1130 Antisense
TAATAGACCCGTTCCGGCTCATAGT 577 633 1164 Antisense
AAATAACATTCAAATCGTCTCGATT 199 117 1229 Antisense
TCTCGATTCCTCTATCAACACGAAC 604 611 1246 Antisense
CAACACGAACAAACTGTCCATCAAA 615 187 1261 Antisense
AATCAACTGACAATCACTGCCACCT 133 171 1306 Antisense
CTCACTTCTCCCATATTTCAAATTC 149 229 1329 Antisense
GAAACAGCATGTTCTACTCACAGAT 204 357 1488 Antisense
GAATATTCAATGTTGCGGAACCCTG 694 321 1516 Antisense
GCGGAACCCTGATGGAAGCCTGAAA 349 249 1530 Antisense
Sequence Source Affymetrix Proprietary Database