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[182815_at]

Description T24C4.4 /REP_DB=WormBase Gene ID /WP=CE19595 /TR=Q9TZ35 /GB=AAC68923.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 28      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 50      6grp_total > 18      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1542
1 2 3 4 range
A 1897.8
(3)
P 		408.6
(-3)
P 		430.8
(-2.9)
P 		811.5
(-1.4)
P 		1489
B 1666
(3)
P 		356
(-3)
P 		436.3
(-2.6)
P 		854.2
(-0.7)
P 		1310
C 1745.9
(3)
P 		401.7
(-3)
P 		504.4
(-2.5)
P 		817.9
(-1.1)
P 		1344
avr 1769.9
(3) 		388.8
(-3) 		457.2
(-2.7) 		827.9
(-1.1) 		1381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1033
1 2 3 4 5 6 range
A 1184.1
(3)
P 		305.2
(-2.3)
P 		294.2
(-2.3)
P 		209.1
(-2.8)
P 		183.8
(-3)
P 		391.1
(-1.8)
P 		1000
B 1003.8
(3)
P 		431.8
(-1.2)
P 		181.4
(-3)
P 		218.7
(-2.7)
P 		183.7
(-3)
P 		456.9
(-1)
P 		822
C 833.7
(3)
P 		382.1
(-1)
P 		202.2
(-2.6)
P 		203
(-2.5)
P 		151.5
(-3)
P 		400.8
(-0.8)
P 		682
avr 1007.2
(3) 		373
(-1.6) 		225.9
(-2.6) 		210.3
(-2.7) 		173
(-3) 		416.3
(-1.3) 		834
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 603
1 2 3 4 range
A 691
(3)
P 		88.7
(-3)
P 		112.6
(-2.8)
P 		118.8
(-2.7)
P 		602
B 531.3
(3)
P 		87.9
(-3)
P 		101.1
(-2.8)
P 		182
(-1.7)
P 		443
C 578
(3)
P 		115.5
(-3)
P 		175.8
(-2.2)
P 		137.9
(-2.7)
P 		463
avr 600.1
(3) 		97.4
(-3) 		129.8
(-2.6) 		146.2
(-2.4) 		503

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 218.3
(3)
P 		108.6
(-1)
P 		64.1
(-2.6)
P 		53
(-3)
P 		55.5
(-2.9)
P 		95.2
(-1.5)
P 		165
B 349.3
(3)
P 		143.7
(-1)
P 		44.1
(-3)
P 		57.9
(-2.7)
P 		74.6
(-2.4)
P 		170.4
(-0.5)
P 		305
C 309
(3)
P 		116.6
(-1.3)
P 		51.5
(-2.8)
P 		40.8
(-3)
P 		49
(-2.8)
P 		134.2
(-0.9)
P 		268
avr 292.2
(3) 		123
(-1.2) 		53.2
(-2.9) 		50.6
(-3) 		59.7
(-2.8) 		133.3
(-0.9) 		242
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182815_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8196
Sequence Type Exemplar sequence
Representative Public ID T24C4.4 NCBI
Target Description T24C4.4 /REP_DB=WormBase Gene ID /WP=CE19595 /TR=Q9TZ35 /GB=AAC68923.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064881 NCBI Caenorhabditis elegans T24C4.4 (T24C4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000044725 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:872653:873463:-1 11/11 None
SNAP00000044714 ENSEMBL cdna:SNAP chromosome:CEL140:III:872985:873463:-1 10/11 None
T24C4.4 ENSEMBL cdna:known chromosome:CEL140:III:872653:874628:-1 gene:T24C4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:872652-874628(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C4.4
Entrez Gene 188845 Entrez gene
SwissProt Q9TZ35 EMBL-EBI
WormBase CE19595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68923 Hypothetical protein T24C4.4 [Caenorhabditis elegans] ref|NP_497282.1| T24C4.4 [Caenorhabditis elegans] 2.0E-85
blast AAC68923 Hypothetical protein T24C4.4 [Caenorhabditis elegans] ref|NP_497282.1| T24C4.4 [Caenorhabditis elegans] 1.0E-75
blast AAC68923 Hypothetical protein T24C4.4 [Caenorhabditis elegans] ref|NP_497282.1| T24C4.4 [Caenorhabditis elegans] 5.0E-57
blast CAE56481 Hypothetical protein CBG24195 [Caenorhabditis briggsae] 2.0E-53
blast CAE56481 Hypothetical protein CBG24195 [Caenorhabditis briggsae] 1.0E-47
blast CAE56481 Hypothetical protein CBG24195 [Caenorhabditis briggsae] 7.0E-42
blast CAE60968 Hypothetical protein CBG04700 [Caenorhabditis briggsae] 1.0E-23
blast CAE60968 Hypothetical protein CBG04700 [Caenorhabditis briggsae] 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR009545 EMBL-EBI Protein of unknown function DUF1164 9.7E-9
Pfam IPR009545 EMBL-EBI Protein of unknown function DUF1164 7.8E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497282.1 3 50-72,93-115,125-147
T24C4.4 3 50-72,93-115,125-147
GENEFINDER00000044725 4 7-29,52-74,95-117,127-149
SNAP00000044714 3 7-29,51-73,93-115
Sequence
Target Sequence 
>C. ELEGANS:182815_AT
tgatagctggcttgtttggtcctacgcgaaaattcaagtaactcgcggtattgttcccta
ttcttcgagtgaaccaacatggctggcggctgccagttggatgatgttcatctcatttgg
tttgttcttcccggttattctgatctacttgcacgcgtcacacaaggtataccaccatgg
atgctgccacagtattcgacataattttaatgggatctcactactgtgttcattgattgt
tattctacaagcagttgcctttattctaatggctgctaatgcttcggattactacggaag
tcttggatattctgcgtatttcgctttggtctctggaattctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATAGCTGGCTTGTTTGGTCCTAC 326 563 78 Antisense
CAAGTAACTCGCGGTATTGTTCCCT 563 183 112 Antisense
TATTGTTCCCTATTCTTCGAGTGAA 33 665 126 Antisense
TGAACCAACATGGCTGGCGGCTGCC 19 575 147 Antisense
TCATCTCATTTGGTTTGTTCTTCCC 118 621 185 Antisense
TGTTCTTCCCGGTTATTCTGATCTA 492 561 200 Antisense
TGCACGCGTCACACAAGGTATACCA 109 577 227 Antisense
TACCACCATGGATGCTGCCACAGTA 87 651 247 Antisense
ATGGGATCTCACTACTGTGTTCATT 448 49 287 Antisense
GGCTGCTAATGCTTCGGATTACTAC 339 539 348 Antisense
TCGCTTTGGTCTCTGGAATTCTCAC 247 601 398 Antisense
Sequence Source Affymetrix Proprietary Database