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[182814_at]

Description C01G5.2 /REP_DB=WormBase Gene ID /WP=CE06748 /TR=Q17567 /GB=AAB37734.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 61      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 273.3
(-2.7)
A 		280.6
(-1.8)
A 		318.5
(3)
A 		270.7
(-3)
A 		48
B 295.1
(3)
M 		267.6
(1)
A 		210.7
(-3)
A 		211.4
(-3)
A 		84
C 295.2
(3)
A 		263
(-1.1)
A 		293.3
(2.8)
A 		248.4
(-3)
A 		47
avr 287.9
(3) 		270.4
(0.6) 		274.2
(1.1) 		243.5
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1099
1 2 3 4 5 6 range
A 223.7
(-2.4)
A 		236.4
(-2.3)
A 		117.3
(-3)
A 		506.8
(-0.9)
P 		632.7
(-0.2)
P 		1216.2
(3)
P 		1099
B 141.1
(-2.9)
A 		179.5
(-2.5)
A 		135.5
(-3)
A 		418.2
(-0)
P 		564.9
(1.5)
P 		708
(3)
P 		573
C 149.2
(-3)
A 		216.8
(-2.4)
M 		276.5
(-1.9)
A 		375.4
(-1)
A 		622.6
(1.2)
P 		828.5
(3)
P 		679
avr 171.3
(-3) 		210.9
(-2.7) 		176.4
(-3) 		433.5
(-0.9) 		606.7
(0.5) 		917.6
(3) 		746
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 99.5
(3)
A 		60.9
(-0.9)
A 		83.3
(1.4)
A 		39.6
(-3)
A 		60
B 94.1
(3)
M 		66.1
(-0.4)
A 		48.8
(-2.5)
A 		45.1
(-3)
A 		49
C 97.7
(2.6)
A 		75.6
(0.4)
A 		102.2
(3)
A 		41.9
(-3)
A 		60
avr 97.1
(3) 		67.5
(-0.2) 		78.1
(0.9) 		42.2
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 41.2
(-2.7)
A 		84.1
(-1.7)
A 		25.6
(-3)
A 		128.5
(-0.7)
P 		190.9
(0.7)
P 		296.1
(3)
P 		271
B 49.1
(-2.6)
A 		59.7
(-2.3)
A 		32.9
(-3)
A 		110.8
(-1)
P 		229.5
(2.1)
P 		264
(3)
P 		231
C 55.3
(-3)
A 		66.2
(-2.7)
M 		70.4
(-2.6)
A 		75.5
(-2.5)
A 		201.5
(1)
P 		277.3
(3)
P 		222
avr 48.5
(-2.9) 		70
(-2.3) 		43
(-3) 		104.9
(-1.4) 		207.3
(1.2) 		279.1
(3) 		236
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11090
Sequence Type Exemplar sequence
Representative Public ID C01G5.2 NCBI
Target Description C01G5.2 /REP_DB=WormBase Gene ID /WP=CE06748 /TR=Q17567 /GB=AAB37734.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068593 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-292) (tag-292) mRNA, complete cds. 11/11 None
SNAP00000022680 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6526948:6529600:-1 11/11 None
GENEFINDER00000022692 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6526948:6528970:-1 11/11 None
C01G5.2 ENSEMBL cdna:known chromosome:CEL140:IV:6526734:6529786:-1 gene:C01G5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6526953-6529606(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-292
Ensembl C01G5.2
Entrez Gene 182072 Entrez gene
SwissProt Q17567 EMBL-EBI
WormBase CE06748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37734 Temporarily assigned gene name protein 292 [Caenorhabditis elegans] ref|NP_500994.1| Temporarily Assigned Gene name family member (tag-292) [Caenorhabditis elegans] 0.0
blast CAA98113 Hypothetical protein D2030.6 [Caenorhabditis elegans] ref|NP_492121.1| D2030.6 [Caenorhabditis elegans] 0.0
blast CAE66621 Hypothetical protein CBG11957 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182814_AT
cccacttcgtccgaaagtctctgaagcagtattacgacaataacgataaaactttgccga
gccgattgattctctacagagatggtgctggagacggacaaattccgtatattaagaaca
ccgaagtcaagttggtccgtgacgcttgcgatgccgtgaccgacaaagctgcggagctga
gcaacaaagttcaagagaagatcaaactggcattcatcattgtcacgaaacgtgtgaata
tgcgtattctcaagcaaggatcgtcgtctaaaagtgccatcaatccgcaaccaggaaccg
tcgtcgacacaactgtcactcgcccagagagaatggacttctacttggttccgcagtttg
tcaaccagggaactgtaacacccgtgtcctacaatatcatccacgatgatactggtcttg
gtccggacaagcatcaacagcttgcattcaaattgtgtcatctctactacaactggcaag
gaactgttcgtgttccagctccgtgtcaatatgcccacaaacttgctttcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCACTTCGTCCGAAAGTCTCTGAA 49 259 1586 Antisense
TTGCCGAGCCGATTGATTCTCTACA 521 701 1639 Antisense
TCAAGTTGGTCCGTGACGCTTGCGA 655 631 1712 Antisense
CAAACTGGCATTCATCATTGTCACG 14 193 1788 Antisense
TAAAAGTGCCATCAATCCGCAACCA 109 641 1854 Antisense
GAACCGTCGTCGACACAACTGTCAC 120 347 1880 Antisense
ACTGTCACTCGCCCAGAGAGAATGG 626 97 1897 Antisense
TTCTACTTGGTTCCGCAGTTTGTCA 498 691 1924 Antisense
TAACACCCGTGTCCTACAATATCAT 664 637 1961 Antisense
GATGATACTGGTCTTGGTCCGGACA 235 411 1990 Antisense
ATATGCCCACAAACTTGCTTTCTTG 147 21 2094 Antisense
Sequence Source Affymetrix Proprietary Database