[Home] | [Total List]

[182812_at]

Description F22F4.1 /REP_DB=WormBase Gene ID /WP=CE07126 /TR=Q19748 /GB=AAA96222.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 43      4grp_high_8_8 > 54      6grp_highest_nonorm > 62      6grp_total > 10      4grp_total > 56      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1342
1 2 3 4 range
A 49.1
(-3)
P 		805.5
(0.5)
P 		1344.1
(3)
P 		68.7
(-2.9)
P 		1295
B 43.7
(-3)
P 		1128.2
(2.5)
P 		1219.3
(3)
P 		77.2
(-2.8)
M 		1176
C 25.5
(-3)
A 		1165
(2.1)
P 		1367.6
(3)
P 		95.9
(-2.7)
P 		1342
avr 39.4
(-3) 		1032.9
(1.7) 		1310.3
(3) 		80.6
(-2.8) 		1271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 729
1 2 3 4 5 6 range
A 88.5
(-3)
P 		817
(3)
P 		457.2
(0)
P 		544.2
(0.8)
P 		358.1
(-0.8)
P 		165.6
(-2.4)
P 		729
B 128.3
(-3)
P 		669.3
(3)
P 		466.6
(0.8)
P 		537
(1.5)
P 		389.8
(-0.1)
P 		180.4
(-2.4)
P 		541
C 184.8
(-3)
P 		718.4
(3)
P 		559.3
(1.2)
P 		423.6
(-0.3)
P 		375.6
(-0.9)
P 		216.6
(-2.6)
P 		534
avr 133.9
(-3) 		734.9
(3) 		494.4
(0.6) 		501.6
(0.7) 		374.5
(-0.6) 		187.5
(-2.5) 		601
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 17.9
(-2.9)
P 		174.9
(-0.1)
P 		351.4
(3)
P 		10.1
(-3)
P 		341
B 13.9
(-3)
P 		278.6
(2.9)
P 		282.5
(3)
P 		16.4
(-2.9)
M 		269
C 8.4
(-3)
A 		334.9
(1.2)
P 		476.6
(3)
P 		16.2
(-2.9)
P 		468
avr 13.4
(-3) 		262.8
(1.2) 		370.2
(3) 		14.2
(-3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 16.3
(-3)
P 		290.6
(3)
P 		99.6
(-1.2)
P 		138
(-0.3)
P 		108.1
(-1)
P 		40.3
(-2.5)
P 		274
B 44.7
(-3)
P 		222.8
(3)
P 		113.3
(-0.7)
P 		142.2
(0.3)
P 		158.4
(0.8)
P 		67.3
(-2.2)
P 		178
C 68.5
(-3)
P 		219.2
(3)
P 		142.4
(-0.1)
P 		85.2
(-2.3)
P 		121.5
(-0.9)
P 		72.5
(-2.8)
P 		151
avr 43.2
(-3) 		244.2
(3) 		118.4
(-0.8) 		121.8
(-0.7) 		129.3
(-0.4) 		60
(-2.5) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16495
Sequence Type Exemplar sequence
Representative Public ID F22F4.1 NCBI
Target Description F22F4.1 /REP_DB=WormBase Gene ID /WP=CE07126 /TR=Q19748 /GB=AAA96222.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076603 NCBI Caenorhabditis elegans F22F4.1 (F22F4.1) mRNA, complete cds. 11/11 None
SNAP00000035899 ENSEMBL cdna:SNAP chromosome:CEL140:X:6005759:6006915:1 11/11 None
GENEFINDER00000035914 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6005792:6006915:1 11/11 None
F22F4.1 ENSEMBL cdna:known chromosome:CEL140:X:6004445:6007001:1 gene:F22F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6004587-6006915(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22F4.1
Entrez Gene 180868 Entrez gene
SwissProt Q19748 EMBL-EBI
WormBase CE07126 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96222 Hypothetical protein F22F4.1 [Caenorhabditis elegans] ref|NP_509004.1| F22F4.1 [Caenorhabditis elegans] 0.0
blast CAE68852 Hypothetical protein CBG14814 [Caenorhabditis briggsae] 0.0
blast AAA96222 Hypothetical protein F22F4.1 [Caenorhabditis elegans] ref|NP_509004.1| F22F4.1 [Caenorhabditis elegans] 1.0E-164
blast AAA96222 Hypothetical protein F22F4.1 [Caenorhabditis elegans] ref|NP_509004.1| F22F4.1 [Caenorhabditis elegans] 1.0E-158
blast CAE68852 Hypothetical protein CBG14814 [Caenorhabditis briggsae] 1.0E-153
blast CAE68852 Hypothetical protein CBG14814 [Caenorhabditis briggsae] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:182812_AT
agagctgctccatcgaaaaacctccaaacggaagcatgcgatcagtgtatcccaatgaat
ctgaaaatggtcagaggagcatggactcaaatctatggaaatccaaaagttgtcaacaag
attttcgggacagttatgagcttggagaacatgaagtcagccaccggaagtattaaaatg
acaagcaagaagacatcctgcgttggaatggaagttggagcagctagtagtcatagaaaa
tcttcaaaaatgaaccttttcttccgtgattcggatgaaggaaatgaactccacgagatg
agaggaaccgtaaccgtcaaagataacattatgagtcttgaaaccaacctttaccgtacc
catatgtgtctggtcaaggctggtccatctgaatctgacagattcgagtatgtgattttg
tcagaaacaactggaaaatacgcttgcaaatcgtatcatgtgttcgtgagaaatacggat
gactttaataggcggcactttgatgatgtctctgaatatatgaaatcgcaagctgatgca
atgccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCTGCTCCATCGAAAAACCTCC 635 69 1090 Antisense
GAAGCATGCGATCAGTGTATCCCAA 551 341 1120 Antisense
GAACATGAAGTCAGCCACCGGAAGT 147 351 1236 Antisense
AAGCAAGAAGACATCCTGCGTTGGA 117 151 1272 Antisense
TGAACCTTTTCTTCCGTGATTCGGA 604 573 1340 Antisense
CAACCTTTACCGTACCCATATGTGT 238 187 1434 Antisense
ATATGTGTCTGGTCAAGGCTGGTCC 485 21 1451 Antisense
AGGCTGGTCCATCTGAATCTGACAG 380 53 1466 Antisense
CGCTTGCAAATCGTATCATGTGTTC 477 255 1530 Antisense
TAGGCGGCACTTTGATGATGTCTCT 372 655 1578 Antisense
AATCGCAAGCTGATGCAATGCCACT 521 167 1613 Antisense
Sequence Source Affymetrix Proprietary Database