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[182811_at]

Description ZK1251.7 /REP_DB=WormBase Gene ID /WP=CE03854 /TR=Q23434 /GB=CAA92503.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 56      6grp_cgc > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 10.9
(-2.4)
A 		16.8
(-1.6)
A 		53
(3)
A 		5.8
(-3)
A 		47
B 27.5
(3)
A 		18.7
(-0.3)
A 		24.5
(1.9)
A 		11.3
(-3)
A 		16
C 22.9
(0.3)
A 		11.2
(-1.9)
A 		37.2
(3)
A 		5.3
(-3)
A 		32
avr 20.4
(-0.5) 		15.6
(-1.4) 		38.2
(3) 		7.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 51.1
(3)
A 		24.8
(-0.4)
A 		28
(0)
A 		4.2
(-3)
A 		5.2
(-2.9)
A 		5.8
(-2.8)
A 		47
B 30.7
(0.4)
A 		32.6
(0.9)
A 		32.7
(0.9)
A 		41.6
(3)
A 		16.4
(-3)
A 		38.2
(2.2)
A 		25
C 33.2
(-0.1)
A 		37.2
(0.4)
A 		10.2
(-3)
A 		57.4
(3)
A 		39.5
(0.7)
A 		41.6
(1)
A 		47
avr 38.3
(3) 		31.5
(0.7) 		23.6
(-1.9) 		34.4
(1.7) 		20.4
(-3) 		28.5
(-0.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4
(-1.6)
A 		3.6
(-1.7)
A 		13.8
(3)
A 		0.9
(-3)
A 		13
B 8.8
(3)
A 		4.6
(-0.9)
A 		5.7
(0.1)
A 		2.4
(-3)
A 		6
C 7.6
(0.3)
A 		3.2
(-1.9)
A 		13
(3)
A 		0.9
(-3)
A 		12
avr 6.8
(0.4) 		3.8
(-1.5) 		10.8
(3) 		1.4
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.4
(3)
A 		8.8
(2.6)
A 		6.1
(0.6)
A 		1.1
(-3)
A 		1.6
(-2.6)
A 		1.4
(-2.8)
A 		8
B 10.7
(0.2)
A 		10.9
(0.4)
A 		7.9
(-2)
A 		11
(0.5)
A 		6.6
(-3)
A 		14.2
(3)
A 		8
C 12.3
(2.2)
A 		11.3
(1.6)
A 		2.6
(-3)
A 		11.5
(1.7)
A 		12.8
(2.4)
A 		13.9
(3)
A 		11
avr 10.8
(3) 		10.3
(2.4) 		5.5
(-3) 		7.9
(-0.3) 		7
(-1.3) 		9.8
(1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182811_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9832
Sequence Type Exemplar sequence
Representative Public ID ZK1251.7 NCBI
Target Description ZK1251.7 /REP_DB=WormBase Gene ID /WP=CE03854 /TR=Q23434 /GB=CAA92503.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069322 NCBI Caenorhabditis elegans ZK1251.7 (ZK1251.7) mRNA, complete cds. 11/11 None
SNAP00000023387 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9690921:9691337:1 11/11 None
GENEFINDER00000023392 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9690921:9691337:1 11/11 None
ZK1251.7 ENSEMBL cdna:known chromosome:CEL140:IV:9690921:9691337:1 gene:ZK1251.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9690926-9691343(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-36
Ensembl ZK1251.7
Entrez Gene 191553 Entrez gene
SwissProt Q23434 EMBL-EBI
WormBase CE03854 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92503 Hypothetical protein ZK1251.7 [Caenorhabditis elegans] ref|NP_501723.1| ZK1251.7 [Caenorhabditis elegans] 3.0E-60
Sequence
Target Sequence 
>C. ELEGANS:182811_AT
gccccacaacttgactcgaagaacaacgaatctcaaaatgactgtgatgctgccgagcag
gcatttctagaaaacatccgtcagcaagcaacaaagtatattttcccaccaatcgaagag
gaaccaattgatttggatgaggaaagattactggaggtttcggatacaacgatgagtgca
tcagagcttttgactttggcgttccagaagcatattgctctattcgcaacaaagaaggaa
ccatcaattcgagaagaacttctccagacttctctcattggaaaaattcaagattttatt
acattgaacttaaattcatacgattctccagttgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCCACAACTTGACTCGAAGAACA 538 281 16 Antisense
AAAATGACTGTGATGCTGCCGAGCA 218 133 50 Antisense
GATGCTGCCGAGCAGGCATTTCTAG 685 413 61 Antisense
GAAAACATCCGTCAGCAAGCAACAA 543 355 85 Antisense
CAAAGTATATTTTCCCACCAATCGA 595 191 107 Antisense
GATTACTGGAGGTTTCGGATACAAC 637 427 161 Antisense
CAGAGCTTTTGACTTTGGCGTTCCA 582 205 197 Antisense
TTGGCGTTCCAGAAGCATATTGCTC 703 707 211 Antisense
GAAGCATATTGCTCTATTCGCAACA 525 341 222 Antisense
CTTCTCCAGACTTCTCTCATTGGAA 318 221 274 Antisense
ATTCATACGATTCTCCAGTTGCCGA 335 11 329 Antisense
Sequence Source Affymetrix Proprietary Database