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[182810_at] 7TM chemoreceptor, sre family

Description C17E7.3 /REP_DB=WormBase Gene ID /WP=CE08263 /TR=O16394 /GB=AAC24276.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 10.1
(-2.1)
A 		21.7
(-0.9)
A 		1.6
(-3)
A 		58
(3)
A 		56
B 9.5
(-2.3)
A 		27.1
(-0)
A 		4.3
(-3)
A 		50
(3)
A 		46
C 4.3
(-2.7)
A 		17.1
(-1.2)
A 		1.5
(-3)
A 		52.4
(3)
A 		51
avr 8
(-2.4) 		22
(-0.7) 		2.5
(-3) 		53.5
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 17.3
(-1)
A 		19.2
(-0.6)
A 		25.6
(0.6)
A 		6.1
(-3)
A 		6.5
(-2.9)
A 		39
(3)
A 		33
B 13.2
(-1.9)
A 		49.2
(3)
P 		5
(-3)
A 		29.1
(0.3)
A 		18.3
(-1.2)
A 		5.4
(-2.9)
A 		44
C 23.2
(0.2)
A 		38.8
(3)
A 		34.4
(2.2)
A 		4.8
(-3)
A 		26
(0.7)
A 		32.9
(2)
A 		34
avr 17.9
(-1.8) 		35.7
(3) 		21.7
(-0.8) 		13.3
(-3) 		16.9
(-2) 		25.8
(0.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.7
(-0.6)
A 		4.7
(0.2)
A 		0.4
(-3)
A 		8.5
(3)
A 		8
B 3
(-1.8)
A 		6.7
(0.6)
A 		1
(-3)
A 		10.6
(3)
A 		10
C 1.4
(-2.3)
A 		4.9
(0.2)
A 		0.5
(-3)
A 		8.8
(3)
A 		8
avr 2.7
(-1.6) 		5.4
(0.3) 		0.6
(-3) 		9.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.2
(-1.8)
A 		6.8
(0.9)
A 		5.6
(0)
A 		1.6
(-3)
A 		2
(-2.7)
A 		9.5
(3)
A 		8
B 4.6
(-1.7)
A 		16.4
(3)
P 		1.2
(-3)
A 		7.7
(-0.4)
A 		7.4
(-0.6)
A 		2
(-2.7)
A 		15
C 8.6
(1.2)
A 		11.8
(3)
A 		8.8
(1.3)
A 		1
(-3)
A 		8.4
(1.1)
A 		11
(2.6)
A 		11
avr 5.5
(-1.5) 		11.7
(3) 		5.2
(-1.7) 		3.4
(-3) 		5.9
(-1.2) 		7.5
(-0) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15241
Sequence Type Exemplar sequence
Representative Public ID C17E7.3 NCBI
Target Description C17E7.3 /REP_DB=WormBase Gene ID /WP=CE08263 /TR=O16394 /GB=AAC24276.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071675
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000014091 ENSEMBL cdna:SNAP chromosome:CEL140:V:3895615:3898021:1 None
C17E7.3 ENSEMBL cdna:known chromosome:CEL140:V:3895615:3897520:1 gene:C17E7.3 None
NM_071675 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-9) (sre-9) mRNA, complete cds. None
GENEFINDER00000014097 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3894774:3897520:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3895614-3897520(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-9
Ensembl C17E7.3
Entrez Gene 182729 Entrez gene
WormBase CE38149 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504076 Serpentine Receptor, class E (epsilon) family member (sre-9) [Caenorhabditis elegans] 1.0E-163
blast AAC24276 Serpentine receptor, class e (epsilon) protein 9 [Caenorhabditis elegans] 1.0E-163
blast NP_504076 Serpentine Receptor, class E (epsilon) family member (sre-9) [Caenorhabditis elegans] 1.0E-156
blast AAC24276 Serpentine receptor, class e (epsilon) protein 9 [Caenorhabditis elegans] 1.0E-156
blast AAC24276 Serpentine receptor, class e (epsilon) protein 9 [Caenorhabditis elegans] 1.0E-142
blast NP_504076 Serpentine Receptor, class E (epsilon) family member (sre-9) [Caenorhabditis elegans] 1.0E-134
blast AAC24276 Serpentine receptor, class e (epsilon) protein 9 [Caenorhabditis elegans] 1.0E-134
blast NP_504076 Serpentine Receptor, class E (epsilon) family member (sre-9) [Caenorhabditis elegans] 1.0E-115
blast CAE62404 Hypothetical protein CBG06491 [Caenorhabditis briggsae] 8.0E-73
blast CAE62404 Hypothetical protein CBG06491 [Caenorhabditis briggsae] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 3.7E-25
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 6.1E-22
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 2.2E-28
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 3.7E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504076.2 7 23-45,58-80,100-122,135-157,167-184,218-240,250-272
C17E7.3 6 9-31,51-73,86-108,118-135,169-191,201-223
SNAP00000014091 4 7-29,64-86,146-168,178-200
GENEFINDER00000014097 8 13-32,65-87,100-122,142-164,177-199,209-226,260-282,292-314
Sequence
Target Sequence 
>C. ELEGANS:182810_AT
aataatcgcaaattcgttggcagtaattctgaacaaattcaacgaaaaattgaactcaaa
gtactattatgcaatggatcgagcgtcgtattcattgtcggaacgatttcaaataaccga
gaatatcaagactgcaaaggttagtgcatcccgagaaccaattttttttgcgcttgcagt
atcaaatttgtacttttactggattagagaaaaaaatttacgagaatttatgattctttt
tgaattttttggtatttttgtgttaatttatttggaacaaaaactgtatttgaaatatgc
aaaattgatacaagtagcaaaattaattagatcgagtttgatggcatctgaaatttattt
gaattccgatgctattttcaagcttcttttaagacctccaatgatttttcagaccttcaa
caacattgttttttcgattggatttttcaacactattgtgaatgtttgtttgattcttga
caactatgacattcctgtaacctataagaacattgcttcagtgtgctgtgactacgccat
tttattatacggaataattgtgccaattgtttactatatccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAATCGCAAATTCGTTGGCAGTA 562 169 414 Antisense
GATCGAGCGTCGTATTCATTGTCGG 708 415 490 Antisense
AGTGCATCCCGAGAACCAATTTTTT 183 59 556 Antisense
ATTTTTTTTGCGCTTGCAGTATCAA 393 15 574 Antisense
TTCAAGCTTCTTTTAAGACCTCCAA 75 685 790 Antisense
AGACCTCCAATGATTTTTCAGACCT 187 69 805 Antisense
GATTTTTCAGACCTTCAACAACATT 98 429 816 Antisense
GACAACTATGACATTCCTGTAACCT 531 365 892 Antisense
GAACATTGCTTCAGTGTGCTGTGAC 137 351 921 Antisense
GTGCTGTGACTACGCCATTTTATTA 155 479 936 Antisense
GTGCCAATTGTTTACTATATCCAGA 659 477 973 Antisense
Sequence Source Affymetrix Proprietary Database