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[182809_at]

Description C33H5.6 /REP_DB=WormBase Gene ID /WP=CE04149 /TR=Q18404 /GB=AAA82265.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_high_8_8 > 03      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 13      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 189.6
(0)
P 		130.8
(-2.9)
P 		129
(-3)
P 		248.4
(3)
P 		119
B 161.1
(-0.6)
P 		116.5
(-2.4)
P 		103
(-3)
M 		249
(3)
P 		146
C 204.9
(-0)
P 		127.9
(-2.7)
P 		120.8
(-3)
P 		289.4
(3)
P 		169
avr 185.2
(-0.2) 		125.1
(-2.7) 		117.6
(-3) 		262.3
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 184
(-3)
P 		253.6
(-1.7)
P 		202.9
(-2.7)
P 		344.5
(-0)
P 		396.5
(0.9)
P 		510.1
(3)
P 		326
B 177.6
(-2.3)
P 		209.1
(-1.8)
P 		134.5
(-3)
P 		292.7
(-0.4)
P 		478.1
(2.6)
P 		501.6
(3)
P 		367
C 178
(-3)
P 		192.5
(-2.8)
P 		245.4
(-1.9)
P 		326.9
(-0.5)
P 		388.4
(0.6)
P 		530.6
(3)
P 		353
avr 179.9
(-3) 		218.4
(-2.3) 		194.3
(-2.7) 		321.4
(-0.5) 		421
(1.3) 		514.1
(3) 		334
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 69
(3)
P 		28.4
(-3)
P 		33.7
(-2.2)
P 		36.4
(-1.8)
P 		41
B 51.4
(2.7)
P 		28.8
(-2)
P 		23.9
(-3)
M 		53.1
(3)
P 		29
C 67.8
(3)
P 		36.8
(-3)
P 		42.1
(-2)
P 		48.8
(-0.7)
P 		31
avr 62.7
(3) 		31.3
(-3) 		33.2
(-2.6) 		46.1
(-0.2) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 33.9
(-3)
P 		90.2
(0.7)
P 		44.2
(-2.3)
P 		87.4
(0.6)
P 		119.6
(2.7)
P 		124.2
(3)
P 		90
B 61.8
(-1.9)
P 		69.6
(-1.6)
P 		32.7
(-3)
P 		77.5
(-1.3)
P 		194.3
(3)
P 		187
(2.7)
P 		162
C 66
(-2.6)
P 		58.7
(-3)
P 		62.5
(-2.8)
P 		65.7
(-2.6)
P 		125.7
(0.4)
P 		177.6
(3)
P 		119
avr 53.9
(-2.6) 		72.8
(-1.6) 		46.5
(-3) 		76.9
(-1.4) 		146.5
(2.2) 		162.9
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9816
Sequence Type Exemplar sequence
Representative Public ID C33H5.6 NCBI
Target Description C33H5.6 /REP_DB=WormBase Gene ID /WP=CE04149 /TR=Q18404 /GB=AAA82265.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068880 NCBI Caenorhabditis elegans C33H5.6 (C33H5.6) mRNA, complete cds. 11/11 None
SNAP00000004475 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7776008:7777855:1 11/11 None
GENEFINDER00000004504 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7776008:7777855:1 9/11 None
C33H5.6 ENSEMBL cdna:known chromosome:CEL140:IV:7776008:7777200:1 gene:C33H5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7776013-7777206(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33H5.6
Entrez Gene 183186 Entrez gene
SwissProt Q18404 EMBL-EBI
WormBase CE04149 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82265 Hypothetical protein C33H5.6 [Caenorhabditis elegans] ref|NP_501281.1| C33H5.6 [Caenorhabditis elegans] 1.0E-143
blast AAA82265 Hypothetical protein C33H5.6 [Caenorhabditis elegans] ref|NP_501281.1| C33H5.6 [Caenorhabditis elegans] 1.0E-141
blast AAA82265 Hypothetical protein C33H5.6 [Caenorhabditis elegans] ref|NP_501281.1| C33H5.6 [Caenorhabditis elegans] 1.0E-113
blast CAE70880 Hypothetical protein CBG17670 [Caenorhabditis briggsae] 1.0E-110
blast CAE70880 Hypothetical protein CBG17670 [Caenorhabditis briggsae] 9.0E-93
blast CAE70880 Hypothetical protein CBG17670 [Caenorhabditis briggsae] 1.0E-81
blast AAA82264 Hypothetical protein C33H5.7 [Caenorhabditis elegans] ref|NP_501280.1| C33H5.7 [Caenorhabditis elegans] 1.0E-57
blast AAA82264 Hypothetical protein C33H5.7 [Caenorhabditis elegans] ref|NP_501280.1| C33H5.7 [Caenorhabditis elegans] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.12
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.29
Sequence
Target Sequence 
>C. ELEGANS:182809_AT
gttgtacttgtttatgatcttcgagatggatctaaaggaaaatcaatagagtgtaagaaa
tatggagtcaattgtttggaatacttggacacagttaaatgtgttcacagtggtccaaat
gacacgacaattcgattacttcatctacaaaagaaatcatatgtccgttattttgatggc
caccgtatgccggttaattttatacgaacaaatccgaaagaccgtgaaaagtttttgtca
agttctgtggatggagaaatacgaatgtttgatacgagaacttttgagaactatggatgc
cttctagctggacacactcctctaattgcttttgatcctgatggaattctattcgctgtt
gcaacaaaatcggacacaatcaaactatttgacatgagatcattcgacttgggtccattc
caatcatttatcattactaaaactgataatgatgaatggtcggatatcgagttttctcca
tgtgggaaatttattttaatttccacgacagctggaagtgttaaatggattgatgctttc
gatggaacactgattcacagcttttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTACTTGTTTATGATCTTCGAG 150 437 160 Antisense
ACGACAATTCGATTACTTCATCTAC 370 91 283 Antisense
TATGTCCGTTATTTTGATGGCCACC 251 655 319 Antisense
GATGGCCACCGTATGCCGGTTAATT 535 281 334 Antisense
TATGGATGCCTTCTAGCTGGACACA 598 655 451 Antisense
ACACACTCCTCTAATTGCTTTTGAT 306 111 471 Antisense
GGAATTCTATTCGCTGTTGCAACAA 441 533 502 Antisense
GAGATCATTCGACTTGGGTCCATTC 204 397 555 Antisense
GGGTCCATTCCAATCATTTATCATT 526 497 570 Antisense
GGATTGATGCTTTCGATGGAACACT 694 507 686 Antisense
GGAACACTGATTCACAGCTTTTCCC 191 529 703 Antisense
Sequence Source Affymetrix Proprietary Database