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[182807_at]

Description ZK262.11 /REP_DB=WormBase Gene ID /WP=CE19328 /TR=Q9XTR2 /GB=CAB16552.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 28      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.9
(1.6)
A 		9.4
(3)
A 		3.1
(-3)
A 		4.8
(-1.4)
A 		6
B 3.7
(-0.9)
A 		6.4
(3)
A 		2.2
(-3)
A 		4.3
(-0)
A 		4
C 8.4
(-0.6)
A 		4.9
(-2.1)
A 		2.7
(-3)
A 		17
(3)
A 		14
avr 6.7
(1) 		6.9
(1.2) 		2.7
(-3) 		8.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 5.8
(3)
A 		3.5
(-1.1)
A 		4.3
(0.4)
A 		2.4
(-3)
A 		3.6
(-0.9)
A 		3.8
(-0.5)
A 		3
B 3.8
(-0.5)
A 		4.8
(2.2)
A 		4.7
(1.9)
A 		5.1
(3)
A 		2.9
(-3)
A 		3.5
(-1.4)
A 		2
C 2.5
(-2.2)
A 		7.4
(3)
A 		3.5
(-1.1)
A 		3.1
(-1.5)
A 		1.7
(-3)
A 		4.2
(-0.4)
A 		6
avr 4
(0.1) 		5.2
(3) 		4.2
(0.6) 		3.5
(-1.1) 		2.7
(-3) 		3.8
(-0.4) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.9
(3)
A 		2
(0.5)
A 		0.8
(-2.7)
A 		0.7
(-3)
A 		2
B 1.2
(0.8)
A 		1.6
(3)
A 		0.5
(-3)
A 		0.9
(-0.8)
A 		1
C 2.8
(2.7)
A 		1.4
(-1.5)
A 		0.9
(-3)
A 		2.9
(3)
A 		2
avr 2.3
(3) 		1.7
(0.8) 		0.7
(-3) 		1.5
(0) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(2)
A 		1.2
(3)
A 		0.9
(0)
A 		0.6
(-3)
A 		1.1
(2)
A 		0.9
(0)
A 		1
B 1.3
(-0.6)
A 		1.6
(3)
A 		1.1
(-3)
A 		1.4
(0.6)
A 		1.2
(-1.8)
A 		1.3
(-0.6)
A 		1
C 0.9
(-1.7)
A 		2.3
(3)
A 		0.9
(-1.7)
A 		0.6
(-2.7)
A 		0.5
(-3)
A 		1.4
(0)
A 		2
avr 1.1
(-1.5) 		1.7
(3) 		1
(-2.3) 		0.9
(-3) 		0.9
(-3) 		1.2
(-0.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13918
Sequence Type Exemplar sequence
Representative Public ID ZK262.11 NCBI
Target Description ZK262.11 /REP_DB=WormBase Gene ID /WP=CE19328 /TR=Q9XTR2 /GB=CAB16552.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075199, NM_075361
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000013656 ENSEMBL cdna:SNAP chromosome:CEL140:V:18406151:18407371:-1 None
SNAP00000010480 ENSEMBL cdna:SNAP chromosome:CEL140:V:19320106:19321073:1 None
NM_075361 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-208) (srh-208) mRNA, complete cds. None
C43D7.6 ENSEMBL cdna:known chromosome:CEL140:V:19319935:19321073:1 gene:C43D7.6 None
GENEFINDER00000013669 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18404457:18415503:-1 None
NM_075199 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-209) (srh-209) mRNA, complete cds. A 
ZK262.11 ENSEMBL cdna:known chromosome:CEL140:V:18406296:18407434:-1 gene:ZK262.11 A 
NM_075361 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-208) (srh-208) mRNA, complete cds. None
GENEFINDER00000010485 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19315122:19323013:1 None
C43D7.6 ENSEMBL cdna:known chromosome:CEL140:V:19319935:19321073:1 gene:C43D7.6 None
ZK262.11 ENSEMBL cdna:known chromosome:CEL140:V:18406296:18407434:-1 gene:ZK262.11 A 
NM_075199 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-209) (srh-209) mRNA, complete cds. A 
SNAP00000010480 ENSEMBL cdna:SNAP chromosome:CEL140:V:19320106:19321073:1 None
SNAP00000013656 ENSEMBL cdna:SNAP chromosome:CEL140:V:18406151:18407371:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19319934-19321069(+) 86.68 86.68
chrV:18406119-18407434(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol srh-208
srh-209
Ensembl ZK262.11
C43D7.6
Entrez Gene 183411 Entrez gene
191273 Entrez gene
SwissProt Q9XVB7 EMBL-EBI
Q9XTR2 EMBL-EBI
WormBase CE35959 Wormbase
CE36074 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03964 Hypothetical protein C43D7.6 [Caenorhabditis elegans] ref|NP_507762.2| Serpentine Receptor, class H family member (srh-208) [Caenorhabditis elegans] 0.0
blast CAB16552 Hypothetical protein ZK262.11 [Caenorhabditis elegans] ref|NP_507600.2| Serpentine Receptor, class H family member (srh-209) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.5E-121
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.2E-119
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.7E-15
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-119
Pfam IPR002921 EMBL-EBI Lipase, class 3 6.4E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507762.2 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
NP_507600.2 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
ZK262.11 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
C43D7.6 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
SNAP00000010480 6 7-25,40-62,83-105,144-166,187-209,222-244
GENEFINDER00000010485 8 362-384,397-419,439-461,482-504,543-565,586-608,621-643,672-689
SNAP00000013656 6 4-21,34-56,76-98,119-141,180-202,223-245
GENEFINDER00000013669 12 443-465,478-500,520-542,563-585,628-650,671-693,837-859,872-894,914-936,957-979,1018-1040,1061-1083
Sequence
Target Sequence 
>C. ELEGANS:182807_AT
aggatatattcaagacccttccctgtctgccgcgtgaaatctacgaagcagatatctatg
tgatagctgatgacatgacttatcatgttatggcgatttcgatgggattgtcaggagcaa
ttggtcagattatatttttcaacggctgtcttatatatagtagtttggagcagttaaagg
caaaaacaatgtcacaaaagacgttccaaatgcagaagcaattcctaacagcagtggtcg
tgcaggctgcatctccaatgatctgcttgataattccacttatatatttcacaatagcac
acttggtggggtattataatcagggaattatcaattgcttacttattaatgtatctattc
acggtctaatatctacaacagctctggtgactcttcataagccttatcgaacggcggtgc
ggagcatgatctcgaaattgccagaaccaaggcgaccgaaagtctcacagttatcaactc
tttcgaggagcactgttgtggtgttctgtcacatgagttgtgttgtgaaccggatcccta
cggtttgcctttcacaactcgtcaacttcggaagtctacaacatcctccagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATATATTCAAGACCCTTCCCTG 195 57 521 Antisense
GTCTGCCGCGTGAAATCTACGAAGC 415 471 545 Antisense
CACGGTCTAATATCTACAACAGCTC 590 197 880 Antisense
TATCTACAACAGCTCTGGTGACTCT 659 659 890 Antisense
TATCGAACGGCGGTGCGGAGCATGA 174 657 925 Antisense
GGAGCACTGTTGTGGTGTTCTGTCA 553 519 1007 Antisense
GTGGTGTTCTGTCACATGAGTTGTG 564 487 1018 Antisense
GAGTTGTGTTGTGAACCGGATCCCT 448 397 1035 Antisense
TGTGAACCGGATCCCTACGGTTTGC 381 553 1044 Antisense
CACAACTCGTCAACTTCGGAAGTCT 54 193 1073 Antisense
CGGAAGTCTACAACATCCTCCAGTT 131 243 1089 Antisense
Sequence Source Affymetrix Proprietary Database