[Home] | [Total List]

[182806_at]

Description C50C10.1 /REP_DB=WormBase Gene ID /WP=CE05459 /TR=Q18735 /GB=CAA94829.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 02      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 2.9
(-3)
A 		12.1
(-2)
A 		21
(-1.1)
A 		60.8
(3)
A 		58
B 28.1
(3)
A 		18.6
(-3)
A 		18.7
(-2.9)
A 		24.7
(0.9)
A 		10
C 28.2
(-2)
A 		24.2
(-2.3)
A 		14.4
(-3)
A 		94.5
(3)
A 		80
avr 19.7
(-2.8) 		18.3
(-3) 		18
(-3) 		60
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 49
(3)
A 		4.7
(-2.6)
A 		25.2
(-0)
A 		15.1
(-1.3)
A 		29.8
(0.6)
A 		1.9
(-3)
A 		47
B 2.1
(-2.8)
A 		11.8
(0.1)
A 		1.5
(-3)
A 		21.7
(3)
A 		9.3
(-0.7)
A 		18
(1.9)
A 		20
C 12.8
(3)
A 		4.5
(-1.5)
A 		3.3
(-2.1)
A 		2.8
(-2.4)
A 		1.7
(-3)
A 		3.8
(-1.9)
A 		11
avr 21.3
(3) 		7
(-3) 		10
(-1.7) 		13.2
(-0.4) 		13.6
(-0.2) 		7.9
(-2.6) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.1
(-3)
A 		2.6
(-1.8)
A 		5.5
(0.4)
A 		8.9
(3)
A 		8
B 9
(3)
A 		4.6
(-2.6)
A 		4.3
(-3)
A 		5.3
(-1.7)
A 		5
C 9.3
(-0.6)
A 		7
(-1.9)
A 		5
(-3)
A 		15.9
(3)
A 		11
avr 6.5
(-1) 		4.7
(-3) 		4.9
(-2.8) 		10
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9
(3)
A 		1.7
(-2.2)
A 		5.5
(0.5)
A 		3.8
(-0.7)
A 		9
(3)
A 		0.5
(-3)
A 		9
B 0.7
(-2.7)
A 		3.9
(0.3)
A 		0.4
(-3)
A 		5.7
(2)
A 		3.8
(0.2)
A 		6.7
(3)
A 		6
C 4.7
(3)
A 		1.4
(-1.8)
A 		0.9
(-2.6)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.3
(-2)
A 		4
avr 4.8
(3) 		2.3
(-3) 		2.3
(-3) 		3.4
(-0.4) 		4.5
(2.3) 		2.8
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11347
Sequence Type Exemplar sequence
Representative Public ID C50C10.1 NCBI
Target Description C50C10.1 /REP_DB=WormBase Gene ID /WP=CE05459 /TR=Q18735 /GB=CAA94829.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073130(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073130 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-37) (sru-37) mRNA, complete cds. 11/11 None
GENEFINDER00000003335 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9808421:9809230:1 11/11 None
C50C10.1 ENSEMBL cdna:known chromosome:CEL140:V:9808043:9809182:1 gene:C50C10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9808042-9809182(+) 99.2 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-37
Ensembl C50C10.1
Entrez Gene 183644 Entrez gene
SwissProt Q18735 EMBL-EBI
WormBase CE05459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94829 Hypothetical protein C50C10.1 [Caenorhabditis elegans] emb|CAA96614.1| Hypothetical protein C50C10.1 [Caenorhabditis elegans] ref|NP_505531.1| Serpentine Receptor, class U family member (sru-37) [Caenorhabditis elegans] 0.0
blast CAA94827 Hypothetical protein F46B6.11 [Caenorhabditis elegans] ref|NP_505530.1| Serpentine Receptor, class U family member (sru-39) [Caenorhabditis elegans] 1.0E-124
blast CAA96664 Hypothetical protein R07B5.4 [Caenorhabditis elegans] ref|NP_505538.1| Serpentine Receptor, class U family member (sru-38) [Caenorhabditis elegans] 1.0E-121
blast CAA94829 Hypothetical protein C50C10.1 [Caenorhabditis elegans] emb|CAA96614.1| Hypothetical protein C50C10.1 [Caenorhabditis elegans] ref|NP_505531.1| Serpentine Receptor, class U family member (sru-37) [Caenorhabditis elegans] 1.0E-115
blast CAA94827 Hypothetical protein F46B6.11 [Caenorhabditis elegans] ref|NP_505530.1| Serpentine Receptor, class U family member (sru-39) [Caenorhabditis elegans] 4.0E-70
blast CAA96664 Hypothetical protein R07B5.4 [Caenorhabditis elegans] ref|NP_505538.1| Serpentine Receptor, class U family member (sru-38) [Caenorhabditis elegans] 2.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505531.1 7 20-42,80-102,117-139,152-174,204-226,249-271,281-303
C50C10.1 7 20-42,80-102,117-139,152-174,204-226,249-271,281-303
GENEFINDER00000003335 4 26-48,78-100,123-145,155-177
Sequence
Target Sequence 
>C. ELEGANS:182806_AT
atgactctggcattttgtgttcaaagagttgcacttttgtatgctgctgagtatcaaaag
gatacaatatccaaggtgtttgacataatcgctccaagtcttataataattggtcattgc
ttcggaattcctcatttcttttccacaacttcctgctatcaaatggacaaaccttttccg
tttggagctattgttatcacggcattgacaagagatatgagaatttacacaatattctac
tcaatgttttcaaacgcttcgattattttaattattgtcactgcaattttgatgttcttc
aaacttttgcaaaaacggaaaataagttccgagctacaccgaaaaacagatctaaaatct
gaaaaagtgttgacagcaacaatgattctgattcttctcccagtcgtggtacctgcaact
ctatcctttgtcaatctttttgcaccaagtgcttatccttatatttttctctctcggtgc
atttgtttagatgctcgggcccattttgtatcatgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTCTGGCATTTTGTGTTCAAA 466 45 391 Antisense
GGTGTTTGACATAATCGCTCCAAGT 663 499 465 Antisense
ATTGGTCATTGCTTCGGAATTCCTC 440 3 499 Antisense
TCGGAATTCCTCATTTCTTTTCCAC 167 607 512 Antisense
GGAGCTATTGTTATCACGGCATTGA 34 521 574 Antisense
GAAAATAAGTTCCGAGCTACACCGA 404 353 708 Antisense
CAATGATTCTGATTCTTCTCCCAGT 365 183 770 Antisense
GCAACTCTATCCTTTGTCAATCTTT 691 319 805 Antisense
TGCACCAAGTGCTTATCCTTATATT 656 577 831 Antisense
TTTCTCTCTCGGTGCATTTGTTTAG 515 671 856 Antisense
CTCGGGCCCATTTTGTATCATGTTA 119 233 884 Antisense
Sequence Source Affymetrix Proprietary Database