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[182802_s_at]

Description F39D8.1B /REP_DB=WormBase Gene ID /WP=CE23707 /TR=Q20189 /GB=CAA93661.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 60      6grp_cgc > 03      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 582
1 2 3 4 range
A 614.7
(3)
P 		586.6
(2.6)
P 		599.7
(2.8)
P 		153.1
(-3)
P 		462
B 485.2
(0.5)
P 		731.3
(3)
P 		556.8
(1.2)
P 		149.1
(-3)
P 		582
C 573
(2.3)
P 		619.7
(3)
P 		581.3
(2.4)
P 		203.9
(-3)
P 		416
avr 557.6
(1.9) 		645.9
(3) 		579.3
(2.2) 		168.7
(-3) 		477

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 428.9
(1.5)
P 		513.4
(3)
P 		185.5
(-3)
P 		239.9
(-2)
P 		344.7
(-0.1)
P 		313.6
(-0.7)
P 		328
B 421
(3)
P 		347.8
(1)
P 		242.2
(-1.9)
P 		297.7
(-0.4)
P 		272.4
(-1)
P 		200.5
(-3)
P 		221
C 445.6
(3)
P 		388.7
(1.2)
P 		320.9
(-0.9)
P 		251.3
(-3)
P 		438.5
(2.8)
P 		257.6
(-2.8)
P 		194
avr 431.8
(3) 		416.6
(2.5) 		249.5
(-3) 		263
(-2.6) 		351.9
(0.4) 		257.2
(-2.7) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 223.8
(3)
P 		127.3
(0.1)
P 		156.8
(1)
P 		22.4
(-3)
P 		201
B 154.7
(2)
P 		180.6
(3)
P 		129
(0.9)
P 		31.8
(-3)
P 		149
C 189.7
(2.5)
P 		178.2
(2.1)
P 		202.6
(3)
P 		34.4
(-3)
P 		168
avr 189.4
(3) 		162
(2) 		162.8
(2) 		29.5
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 79.1
(-1.4)
P 		182.6
(3)
P 		40.4
(-3)
P 		60.8
(-2.1)
P 		104
(-0.3)
P 		76.4
(-1.5)
P 		142
B 146.5
(3)
P 		115.8
(0.9)
P 		58.8
(-3)
P 		78.9
(-1.6)
P 		110.7
(0.6)
P 		74.8
(-1.9)
P 		88
C 165.2
(3)
P 		118.6
(0.6)
P 		81.7
(-1.4)
P 		50.5
(-3)
P 		141.9
(1.8)
P 		86.2
(-1.1)
P 		115
avr 130.3
(2.3) 		139
(3) 		60.3
(-3) 		63.4
(-2.8) 		118.9
(1.5) 		79.1
(-1.6) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182802_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17847
Sequence Type Exemplar sequence
Representative Public ID F39D8.1B NCBI
Target Description F39D8.1B /REP_DB=WormBase Gene ID /WP=CE23707 /TR=Q20189 /GB=CAA93661.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078145(11), NM_078146(11), NM_078144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078145 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds. 11/11 A 
NM_078146 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds. 11/11 A 
NM_078144 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds. 11/11 A 
SNAP00000018944 ENSEMBL cdna:SNAP chromosome:CEL140:X:15409259:15413490:-1 11/11 None
GENEFINDER00000018948 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15409259:15413738:-1 11/11 None
F39D8.1a ENSEMBL cdna:known chromosome:CEL140:X:15409092:15413538:-1 gene:F39D8.1 11/11 A 
F39D8.1c ENSEMBL cdna:known chromosome:CEL140:X:15409094:15413302:-1 gene:F39D8.1 11/11 A 
F39D8.1b ENSEMBL cdna:known chromosome:CEL140:X:15409259:15415410:-1 gene:F39D8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15409258-15415138(-) 100.0 100.0
Public Domain and Genome References
Ensembl F39D8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93660 Hypothetical protein F39D8.1a [Caenorhabditis elegans] ref|NP_510546.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) [Caenorhabditis elegans] 0.0
blast CAA93662 Hypothetical protein F39D8.1c [Caenorhabditis elegans] ref|NP_510547.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) [Caenorhabditis elegans] 0.0
blast CAA93661 Hypothetical protein F39D8.1b [Caenorhabditis elegans] ref|NP_510545.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182802_S_AT
tcaaccgggttccaatcaaccactggaatgccgaccacgaacgatcaatccggttttatc
gcctcgtccacaatggatccgaacatgccacaagcgcaatatccaagtcaacaagaaata
atgacggcgaccggccaacaatccgatcaatcgaacagtgctaatatggtgtccaccccc
gcgccacagtttccaagtcaacaggaactcggtgccacatcgcaaaacacgcagcctaca
ccagtcccacagttcccagctcaacaagacttgggatccactgccggccagaatggtaac
tttaatggccagcaaaacggcggtggtttcacacaacaggctgctggtgtgacacctcaa
ttcccaagtcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCGGGTTCCAATCAACCACTG 350 629 2158 Antisense
GAATGCCGACCACGAACGATCAATC 93 331 2183 Antisense
CGATCAATCCGGTTTTATCGCCTCG 262 249 2199 Antisense
GCCTCGTCCACAATGGATCCGAACA 199 283 2218 Antisense
TAATGACGGCGACCGGCCAACAATC 184 635 2276 Antisense
TCGGTGCCACATCGCAAAACACGCA 490 605 2366 Antisense
ACAGTTCCCAGCTCAACAAGACTTG 692 107 2406 Antisense
ATCCACTGCCGGCCAGAATGGTAAC 7 41 2433 Antisense
AACGGCGGTGGTTTCACACAACAGG 132 141 2473 Antisense
ACAACAGGCTGCTGGTGTGACACCT 676 111 2490 Antisense
GTGACACCTCAATTCCCAAGTCAAC 279 483 2506 Antisense
Sequence Source Affymetrix Proprietary Database