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[182797_at]

Description Y11D7A.7 /REP_DB=WormBase Gene ID /WP=CE20190 /TR=Q9XWR5 /GB=CAA21583.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 28.3
(-3)
A 		49.6
(-1.7)
A 		68.8
(-0.5)
A 		124.6
(3)
P 		96
B 28.6
(-3)
A 		49.2
(-1.7)
A 		56.7
(-1.3)
A 		126.2
(3)
P 		98
C 46
(-3)
A 		99.7
(-0.8)
A 		70.7
(-2)
A 		192.1
(3)
P 		146
avr 34.3
(-3) 		66.2
(-1.3) 		65.4
(-1.4) 		147.6
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 47.4
(-3)
A 		47.9
(-3)
A 		59.6
(-2.7)
A 		89.9
(-1.9)
A 		236.9
(2)
P 		276.3
(3)
P 		229
B 29.1
(-2.8)
A 		28.5
(-2.9)
A 		20.7
(-3)
A 		63.2
(-2.2)
A 		239.5
(1.2)
P 		336.1
(3)
P 		315
C 16.8
(-3)
A 		32.8
(-2.7)
A 		71.9
(-2)
A 		93.9
(-1.6)
A 		200.7
(0.4)
P 		342.2
(3)
P 		325
avr 31.1
(-3) 		36.4
(-2.9) 		50.7
(-2.6) 		82.3
(-1.9) 		225.7
(1.1) 		318.2
(3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 10.3
(-3)
A 		10.8
(-2.6)
A 		18
(2.8)
A 		18.2
(3)
P 		8
B 9.1
(-3)
A 		12.1
(-2)
A 		13.1
(-1.7)
A 		26.9
(3)
P 		18
C 15.2
(-3)
A 		28.7
(1.7)
A 		24.6
(0.3)
A 		32.4
(3)
P 		17
avr 11.5
(-3) 		17.2
(-0.6) 		18.6
(-0) 		25.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 8.7
(-3)
A 		17
(-2.2)
A 		13
(-2.6)
A 		22.8
(-1.7)
A 		71.5
(3)
P 		67.3
(2.6)
P 		63
B 10.1
(-2.7)
A 		9.5
(-2.8)
A 		5
(-3)
A 		16.7
(-2.4)
A 		97.3
(1.6)
P 		125.3
(3)
P 		120
C 6.2
(-3)
A 		10
(-2.8)
A 		18.3
(-2.3)
A 		18.9
(-2.3)
A 		65
(0.3)
P 		114.5
(3)
P 		108
avr 8.3
(-3) 		12.2
(-2.8) 		12.1
(-2.8) 		19.5
(-2.3) 		77.9
(1.4) 		102.4
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8401
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.7 NCBI
Target Description Y11D7A.7 /REP_DB=WormBase Gene ID /WP=CE20190 /TR=Q9XWR5 /GB=CAA21583.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069212 NCBI Caenorhabditis elegans Y11D7A.7 (Y11D7A.7) mRNA, complete cds. 11/11 None
SNAP00000011205 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9249507:9250089:1 9/11 None
GENEFINDER00000011230 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9249507:9250839:1 11/11 None
Y11D7A.7 ENSEMBL cdna:known chromosome:CEL140:IV:9249507:9250839:1 gene:Y11D7A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9249512-9250845(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.7
Entrez Gene 189432 Entrez gene
SwissProt Q9XWR5 EMBL-EBI
WormBase CE20190 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21583 Hypothetical protein Y11D7A.7 [Caenorhabditis elegans] ref|NP_501613.1| Y11D7A.7 [Caenorhabditis elegans] 2.0E-96
blast CAA21583 Hypothetical protein Y11D7A.7 [Caenorhabditis elegans] ref|NP_501613.1| Y11D7A.7 [Caenorhabditis elegans] 2.0E-73
Sequence
Target Sequence 
>C. ELEGANS:182797_AT
ggagatctcattcgtgattttctgatggccaataatacttcggaaaccaaacgaatcttc
ggtcagccaattgatatcagcaatattgagcgaaaagacttcgatgagtcagcggagtcg
atgattgaaacgctgaaaaatggtttcgaggatggtgagctcactccgatgtttctgacg
gtcaaacagattcgggaatttattctggcatcaaatatcgatggaggagtaaacatgaaa
attctggaagaatgtcagagagtgaaagaggaagatgaaaaatggcagaaaattttcaaa
gagatgaaacagcgcgacgctgagaataagaaacgcagagacttagcaaattcgtcttcc
cgcgatggatcatcgtcctcaattgccaattcgcgctcgaacgataatcatgagtcgttc
aaatcgtcaaaaaacaagtcaactacattaggacacgcctcttttctattgaaaactcag
aagttgtcgtcattccacgagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGATCTCATTCGTGATTTTCTGA 128 519 58 Antisense
AACGAATCTTCGGTCAGCCAATTGA 222 145 107 Antisense
GACTTCGATGAGTCAGCGGAGTCGA 104 371 154 Antisense
GTTTCGAGGATGGTGAGCTCACTCC 321 449 200 Antisense
AGCTCACTCCGATGTTTCTGACGGT 511 77 215 Antisense
GAGACTTAGCAAATTCGTCTTCCCG 522 393 395 Antisense
CGTCTTCCCGCGATGGATCATCGTC 684 245 410 Antisense
TGGATCATCGTCCTCAATTGCCAAT 314 551 423 Antisense
TCAATTGCCAATTCGCGCTCGAACG 647 631 436 Antisense
TTAGGACACGCCTCTTTTCTATTGA 681 679 505 Antisense
GAAGTTGTCGTCATTCCACGAGCAA 520 337 537 Antisense
Sequence Source Affymetrix Proprietary Database