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[182796_at]

Description F13A2.6 /REP_DB=WormBase Gene ID /WP=CE09368 /TR=O16891 /GB=AAB69900.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 29      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 17.3
(-1.9)
A 		52.9
(2.3)
A 		7.5
(-3)
A 		58.8
(3)
A 		51
B 47.8
(3)
A 		15
(-2.1)
A 		15.6
(-2)
A 		9.2
(-3)
A 		39
C 40.1
(3)
A 		9.3
(-1.8)
A 		1.8
(-3)
A 		34.1
(2.1)
A 		38
avr 35.1
(3) 		25.7
(0.9) 		8.3
(-3) 		34
(2.8) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 11
(-0.5)
A 		11.8
(-0.3)
A 		6.9
(-1.9)
A 		3.7
(-3)
A 		21.5
(3)
A 		20
(2.5)
A 		18
B 8.8
(-2.7)
A 		15
(-1.2)
A 		26.2
(1.5)
A 		7.4
(-3)
A 		32.5
(3)
A 		10.7
(-2.2)
A 		25
C 9.6
(-2.5)
A 		6.2
(-3)
A 		8.7
(-2.6)
A 		11.5
(-2.2)
A 		45.2
(3)
A 		28
(0.4)
A 		39
avr 9.8
(-2.5) 		11
(-2.2) 		13.9
(-1.5) 		7.5
(-3) 		33.1
(3) 		19.6
(-0.2) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6.3
(-0.3)
A 		11.5
(3)
A 		2
(-3)
A 		8.6
(1.2)
A 		10
B 15.3
(3)
A 		3.7
(-2.2)
A 		3.6
(-2.3)
A 		2
(-3)
A 		13
C 13.3
(3)
A 		2.7
(-2)
A 		0.6
(-3)
A 		5.8
(-0.5)
A 		13
avr 11.6
(3) 		6
(-0.5) 		2.1
(-3) 		5.5
(-0.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-1.8)
A 		4.2
(0.5)
A 		1.5
(-2.4)
A 		0.9
(-3)
A 		6.5
(3)
A 		4.9
(1.3)
A 		6
B 3.1
(-2.4)
A 		5
(-1.4)
A 		6.4
(-0.6)
A 		2
(-3)
A 		13.2
(3)
A 		4
(-1.9)
A 		11
C 3.6
(-2.2)
A 		1.9
(-3)
A 		2.2
(-2.9)
A 		2.3
(-2.8)
A 		14.6
(3)
A 		9.4
(0.5)
A 		13
avr 2.9
(-2.3) 		3.7
(-1.8) 		3.4
(-1.9) 		1.7
(-3) 		11.4
(3) 		6.1
(-0.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15462
Sequence Type Exemplar sequence
Representative Public ID F13A2.6 NCBI
Target Description F13A2.6 /REP_DB=WormBase Gene ID /WP=CE09368 /TR=O16891 /GB=AAB69900.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071811
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000037911 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4402563:4404236:-1 None
SNAP00000037901 ENSEMBL cdna:SNAP chromosome:CEL140:V:4402563:4403830:-1 None
F13A2.6 ENSEMBL cdna:known chromosome:CEL140:V:4402563:4404344:-1 gene:F13A2.6 None
NM_071811 NCBI Caenorhabditis elegans F13A2.6 (F13A2.6) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4402175-4404344(-) 97.18 100.0
Public Domain and Genome References
Gene Title
Ensembl F13A2.6
Entrez Gene 184397 Entrez gene
SwissProt O16891 EMBL-EBI
WormBase CE36820 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69900 Hypothetical protein F13A2.6 [Caenorhabditis elegans] ref|NP_504212.2| F13A2.6 [Caenorhabditis elegans] 1.0E-176
blast AAB69900 Hypothetical protein F13A2.6 [Caenorhabditis elegans] ref|NP_504212.2| F13A2.6 [Caenorhabditis elegans] 1.0E-146
blast AAB69900 Hypothetical protein F13A2.6 [Caenorhabditis elegans] ref|NP_504212.2| F13A2.6 [Caenorhabditis elegans] 6.0E-98
blast CAB60551 Hypothetical protein Y73F8A.23 [Caenorhabditis elegans] ref|NP_502858.1| Y73F8A.23 [Caenorhabditis elegans] 5.0E-21
blast CAB60551 Hypothetical protein Y73F8A.23 [Caenorhabditis elegans] ref|NP_502858.1| Y73F8A.23 [Caenorhabditis elegans] 6.0E-21
blast CAB60550 Hypothetical protein Y73F8A.22 [Caenorhabditis elegans] ref|NP_502857.1| Y73F8A.22 [Caenorhabditis elegans] 3.0E-19
blast CAE65646 Hypothetical protein CBG10704 [Caenorhabditis briggsae] 1.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504212.2 2 20-42,269-288
F13A2.6 2 20-42,269-288
Sequence
Target Sequence 
>C. ELEGANS:182796_AT
ttcagtttgtttatcgactcgcgccttcccagacccttactgcatgaatggaaatgcagc
ccagtcactatgccaagaggatgatggaaacgggatgtctgctcagtattcaatcgaaga
gctggaaatcattcaggaatcttggcgccaagtatacacgaccgcaaatgttggattagg
tacaccagcaacctataccgcaaatttgtggaccgatggcagttgtactaacaatgcaga
catttgtagttattctgacccaactcttagtccagtatttggaaacttcatggtagatgc
gaaaagagatactttttttactgtcattatttattcctcattggtattagttttattaac
tcaaagtactgcagccgacggctcacttgttaaatttttcagatgccaattaacaactgc
gtgggctgccgggagctgccttcgaggtaggacacttttttactacgcgaatataaccaa
cctaaaaaaatttcggaaatttttttcattattattttttaaaaattgcctatcgaacca
gactagttttctaccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGTTTGTTTATCGACTCGCGCC 474 687 504 Antisense
TTCCCAGACCCTTACTGCATGAATG 638 697 529 Antisense
AGCCCAGTCACTATGCCAAGAGGAT 676 81 561 Antisense
GGAAACGGGATGTCTGCTCAGTATT 297 527 589 Antisense
ATCATTCAGGAATCTTGGCGCCAAG 282 29 631 Antisense
TGGCGCCAAGTATACACGACCGCAA 376 545 646 Antisense
ATTCTGACCCAACTCTTAGTCCAGT 151 5 755 Antisense
ACTCAAAGTACTGCAGCCGACGGCT 162 97 862 Antisense
GGAGCTGCCTTCGAGGTAGGACACT 199 519 935 Antisense
GGACACTTTTTTACTACGCGAATAT 102 525 953 Antisense
GAACCAGACTAGTTTTCTACCACAA 593 345 1038 Antisense
Sequence Source Affymetrix Proprietary Database