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[182795_at]

Description K08H10.9 /REP_DB=WormBase Gene ID /WP=CE18881 /TR=Q9XU81 /GB=CAB05547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 595
1 2 3 4 range
A 409.4
(-3)
P 		495.3
(-1.2)
P 		442.4
(-2.3)
P 		697.2
(3)
P 		288
B 396.3
(-2.4)
P 		534.1
(-0.6)
P 		355.1
(-3)
P 		804.2
(3)
P 		449
C 495.3
(-1.9)
P 		395.3
(-3)
P 		458.8
(-2.3)
P 		950.3
(3)
P 		555
avr 433.7
(-2.8) 		474.9
(-2.2) 		418.8
(-3) 		817.2
(3) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 345
(-3)
P 		495.9
(-0.8)
P 		760
(3)
P 		748.9
(2.8)
P 		529.2
(-0.3)
P 		720.1
(2.4)
P 		415
B 344
(-3)
P 		489.9
(-0.6)
P 		541.8
(0.3)
P 		513.9
(-0.2)
P 		632.2
(1.8)
P 		706.6
(3)
P 		363
C 523.6
(-2.7)
P 		513.9
(-3)
P 		569.2
(-1.3)
P 		641
(1)
P 		704.5
(3)
P 		661
(1.6)
P 		191
avr 404.2
(-3) 		499.9
(-1) 		623.7
(1.5) 		634.6
(1.7) 		622
(1.5) 		695.9
(3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 149
(3)
P 		107.5
(-2.3)
P 		115.7
(-1.3)
P 		102.1
(-3)
P 		47
B 126.4
(-0)
P 		131.9
(0.3)
P 		82.3
(-3)
P 		171.4
(3)
P 		89
C 164
(3)
P 		113.7
(-3)
P 		159.9
(2.5)
P 		160.2
(2.5)
P 		50
avr 146.5
(3) 		117.7
(-3) 		119.3
(-2.7) 		144.6
(2.6) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 63.6
(-3)
P 		176.4
(2.4)
P 		165.5
(1.8)
P 		189.9
(3)
P 		159.7
(1.6)
P 		175.3
(2.3)
P 		126
B 119.7
(-3)
P 		163.1
(-1.2)
P 		131.6
(-2.5)
P 		136.1
(-2.3)
P 		256.9
(2.7)
P 		263.5
(3)
P 		144
C 194.1
(0.9)
P 		156.8
(-1.3)
P 		144.9
(-2)
P 		128.9
(-3)
P 		228
(3)
P 		221.3
(2.6)
P 		99
avr 125.8
(-3) 		165.4
(-0.5) 		147.3
(-1.6) 		151.6
(-1.4) 		214.9
(2.7) 		220
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12392
Sequence Type Exemplar sequence
Representative Public ID K08H10.9 NCBI
Target Description K08H10.9 /REP_DB=WormBase Gene ID /WP=CE18881 /TR=Q9XU81 /GB=CAB05547.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073170 NCBI Caenorhabditis elegans K08H10.9 (K08H10.9) mRNA, complete cds. 11/11 None
SNAP00000005148 ENSEMBL cdna:SNAP chromosome:CEL140:V:9994489:9995288:1 11/11 None
GENEFINDER00000005157 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9994379:9995288:1 11/11 None
K08H10.9 ENSEMBL cdna:known chromosome:CEL140:V:9994469:9995294:1 gene:K08H10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9994488-9995288(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08H10.9
Entrez Gene 179394 Entrez gene
SwissProt Q9XU81 EMBL-EBI
WormBase CE18881 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259085_AT transport protein particle (TRAPP) component Bet3 family protein at
CANINE_2:CFAAFFX.21417.1.S1_AT similar to Trafficking protein particle complex subunit 6B cfa
DROSOPHILA_2:1638671_AT dm
DROSGENOME1:149950_AT dm
CHICKEN:GGA.2820.1.S1_AT trafficking protein particle complex 6B gga
HU35KSUBA:RC_AA504210_AT trafficking protein particle complex 6B hs
U133_X3P:HS.13303.0.S1_3P_AT trafficking protein particle complex 6B hs
HG-U133_PLUS_2:225537_AT trafficking protein particle complex 6B hs
HG-U133B:225537_AT trafficking protein particle complex 6B hs
HG-U95B:48521_AT trafficking protein particle complex 6B hs
HG-U95D:77473_AT trafficking protein particle complex 6B hs
HG-U95E:83471_R_AT trafficking protein particle complex 6B hs
HG-U95D:90605_AT trafficking protein particle complex 6B hs
MG-U74BV2:112783_AT trafficking protein particle complex 6B mm
MG-U74CV2:135715_R_AT trafficking protein particle complex 6B mm
MOE430B:1428178_S_AT trafficking protein particle complex 6B mm
MOUSE430_2:1428178_S_AT trafficking protein particle complex 6B mm
MOE430B:1428177_AT trafficking protein particle complex 6B mm
MOUSE430_2:1428177_AT trafficking protein particle complex 6B mm
MU19KSUBC:TC36001_AT Trafficking protein particle complex 6B, mRNA (cDNA clone MGC:25781 IMAGE:4017482) mm
RG-U34A:RC_AA800622_AT hypothetical LOC299075 (predicted) rn
RAE230A:1372283_AT hypothetical LOC299075 (predicted) rn
RAT230_2:1372283_AT hypothetical LOC299075 (predicted) rn
RG-U34C:RC_AI175288_AT Hypothetical LOC299075 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB05547 Hypothetical protein K08H10.9 [Caenorhabditis elegans] ref|NP_505571.1| K08H10.9 [Caenorhabditis elegans] 1.0E-101
blast CAE72297 Hypothetical protein CBG19427 [Caenorhabditis briggsae] 7.0E-94
blast CAE72297 Hypothetical protein CBG19427 [Caenorhabditis briggsae] 9.0E-94
blast NP_084333 trafficking protein particle complex 6B [Mus musculus] dbj|BAC40741.1| unnamed protein product [Mus musculus] dbj|BAB31972.1| unnamed protein product [Mus musculus] sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subunit 6B gb|AAH31464.1| Trafficking protein particle complex 6B [Mus musculus] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR007194 EMBL-EBI Transport protein particle (TRAPP) component, Bet3 8.2E-81
Pfam IPR007194 EMBL-EBI Transport protein particle (TRAPP) component, Bet3 8.2E-81
Sequence
Target Sequence 
>C. ELEGANS:182795_AT
tggcgtttccttttgatattttacatttggaaattatccgttcaactttggaaagtgaaa
aagatcgatgtgaagcaaaggaaaagtttggaacaattatcgataacttgaatggtccag
ctgatattgaaaagtacgaaagcttagttcaaaaagcttttcttcacgcaaatgcagaga
ctaaacttgagtcgatcggattcagagttggaaggcagctcgtggaaaaagtatcaaaag
agtctccgaaattggtcactgagttagaaattgtaaagttcatttgcaaggatttctggt
catcagtgtttggcaagcaagtcgataatctccgcacaaatcatcagggtgtctatgttg
ttcaagatggaagatttacaacgctgcgaagttttcccgaaggtgatcaatacgtgaaag
aaagtggatatttccttgcttttccatgtggtttacttcgcggagcccttgctggtctta
atattaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGTTTCCTTTTGATATTTTACA 440 545 14 Antisense
TCGATAACTTGAATGGTCCAGCTGA 151 603 113 Antisense
AAAGCTTTTCTTCACGCAAATGCAG 134 125 166 Antisense
AAGAGTCTCCGAAATTGGTCACTGA 253 155 251 Antisense
TCTGGTCATCAGTGTTTGGCAAGCA 376 579 308 Antisense
GCAAGCAAGTCGATAATCTCCGCAC 589 319 326 Antisense
TAATCTCCGCACAAATCATCAGGGT 450 635 339 Antisense
TACAACGCTGCGAAGTTTTCCCGAA 170 643 390 Antisense
ATATTTCCTTGCTTTTCCATGTGGT 430 19 441 Antisense
TCCATGTGGTTTACTTCGCGGAGCC 116 591 456 Antisense
AGCCCTTGCTGGTCTTAATATTAGA 61 83 477 Antisense
Sequence Source Affymetrix Proprietary Database