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[182794_s_at]

Description K04C1.2A /REP_DB=WormBase Gene ID /WP=CE06086 /TR=Q21205 /GB=CAA94213.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 210.2
(3)
P 		125.9
(-1.7)
A 		102.2
(-3)
A 		141.1
(-0.8)
A 		108
B 193.6
(3)
P 		115
(-3)
A 		134.9
(-1.5)
A 		161
(0.5)
A 		79
C 221.9
(3)
P 		170.4
(-1.8)
A 		158
(-3)
A 		174.1
(-1.5)
A 		64
avr 208.6
(3) 		137.1
(-2.6) 		131.7
(-3) 		158.7
(-0.9) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 217.9
(0.8)
P 		265.2
(3)
A 		155.6
(-2)
A 		133.4
(-3)
A 		220.7
(1)
A 		251.1
(2.4)
P 		132
B 234.5
(0)
P 		268.7
(3)
A 		235.8
(0.1)
P 		244.5
(0.9)
M 		246
(1)
A 		199.9
(-3)
P 		69
C 248.8
(2.1)
P 		248.4
(2)
A 		218.3
(0.5)
A 		222.7
(0.7)
M 		266.7
(3)
A 		151.8
(-3)
P 		115
avr 233.7
(0.3) 		260.8
(3) 		203.2
(-2.7) 		200.2
(-3) 		244.5
(1.4) 		200.9
(-2.9) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 76.5
(3)
P 		27.3
(-2.3)
A 		26.7
(-2.4)
A 		20.7
(-3)
A 		56
B 61.7
(3)
P 		28.4
(-3)
A 		31.3
(-2.5)
A 		34.3
(-1.9)
A 		33
C 73.5
(3)
P 		49
(-0.3)
A 		55.1
(0.5)
A 		29.4
(-3)
A 		44
avr 70.6
(3) 		34.9
(-2) 		37.7
(-1.6) 		28.1
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 40.2
(-2.4)
P 		94.3
(3)
A 		33.9
(-3)
A 		33.8
(-3)
A 		66.6
(0.3)
A 		61.1
(-0.3)
P 		61
B 81.6
(0.4)
P 		89.4
(1.5)
A 		57.3
(-3)
P 		64.8
(-1.9)
M 		99.9
(3)
A 		74.6
(-0.6)
P 		43
C 92.2
(3)
P 		75.8
(0.9)
A 		55.6
(-1.6)
A 		44.8
(-3)
M 		86.3
(2.3)
A 		50.8
(-2.2)
P 		47
avr 71.3
(0.6) 		86.5
(3) 		48.9
(-2.8) 		47.8
(-3) 		84.3
(2.7) 		62.2
(-0.8) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182794_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17752
Sequence Type Exemplar sequence
Representative Public ID K04C1.2A NCBI
Target Description K04C1.2A /REP_DB=WormBase Gene ID /WP=CE06086 /TR=Q21205 /GB=CAA94213.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077971(11), NM_077972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077971 NCBI Caenorhabditis elegans K04C1.2b (K04C1.2) mRNA, complete cds. 11/11 None
NM_077972 NCBI Caenorhabditis elegans K04C1.2a (K04C1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000041365 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14238643:14240873:1 11/11 None
SNAP00000041359 ENSEMBL cdna:SNAP chromosome:CEL140:X:14238745:14240873:1 11/11 None
K04C1.2a ENSEMBL cdna:known chromosome:CEL140:X:14238626:14240873:1 gene:K04C1.2 11/11 None
K04C1.2b ENSEMBL cdna:known chromosome:CEL140:X:14238626:14241265:1 gene:K04C1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14238642-14240873(+) 100.0 100.0
Public Domain and Genome References
Ensembl K04C1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94214 Hypothetical protein K04C1.2b [Caenorhabditis elegans] ref|NP_510372.1| K04C1.2b [Caenorhabditis elegans] 0.0
blast CAA94213 Hypothetical protein K04C1.2a [Caenorhabditis elegans] ref|NP_510373.1| K04C1.2a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182794_S_AT
tctcagaacagagtccaccagccatctcaaggacctctccatcaagaagctgatgctcct
gaagcaaatcgtaggcagcctcgtcaatcagcagaaagccgacggagagtgcctgccaac
ccagaatacatgacaccagaagcttcagaaatgcagcagcccgttcagccagtcaggccg
actttgttagcctttgaacatgaaagtgcacgagtttacattccagaaaattgtgacatg
aactacgaattgtgggattgtcaggatgtagctaattgggccgcaatgttcatcataaat
aatccatacaagaccgtagatccactcatcaaagatgccattgacggaagcatgatgcgt
gattttcttactgataaggatctcagggccattctcaacatcccatttggtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCAGAACAGAGTCCACCAGCCAT 412 609 1060 Antisense
ATCTCAAGGACCTCTCCATCAAGAA 263 31 1083 Antisense
ATCGTAGGCAGCCTCGTCAATCAGC 648 35 1127 Antisense
AGAAAGCCGACGGAGAGTGCCTGCC 310 73 1152 Antisense
GCCAACCCAGAATACATGACACCAG 517 277 1174 Antisense
TCAGAAATGCAGCAGCCCGTTCAGC 115 625 1204 Antisense
GCCAGTCAGGCCGACTTTGTTAGCC 385 277 1227 Antisense
CAAGACCGTAGATCCACTCATCAAA 39 185 1368 Antisense
GCATGATGCGTGATTTTCTTACTGA 245 311 1409 Antisense
TAAGGATCTCAGGGCCATTCTCAAC 105 637 1434 Antisense
CATTCTCAACATCCCATTTGGTCAC 537 215 1449 Antisense
Sequence Source Affymetrix Proprietary Database