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[182793_at]

Description C11G10.1 /REP_DB=WormBase Gene ID /WP=CE03015 /TR=Q17903 /GB=CAA91973.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 92      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 92      6grp_total > 84      4grp_total > 24      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 138.5
(-3)
P 		149.3
(-2)
P 		167.3
(-0.4)
P 		204.7
(3)
P 		66
B 150.1
(-3)
P 		175.9
(-0.1)
P 		202.8
(3)
P 		179.7
(0.4)
P 		53
C 144.6
(-3)
P 		197.1
(0.4)
P 		188.5
(-0.2)
P 		237.1
(3)
P 		93
avr 144.4
(-3) 		174.1
(-0.2) 		186.2
(1) 		207.2
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 134.7
(-3)
P 		234.5
(-1.5)
P 		314.1
(-0.4)
P 		543.1
(3)
P 		426.8
(1.3)
P 		360.1
(0.3)
P 		408
B 119.9
(-3)
P 		268
(-0.6)
P 		322.7
(0.3)
P 		457.4
(2.5)
P 		491.1
(3)
P 		380
(1.2)
P 		371
C 134.1
(-3)
P 		299.6
(-0.2)
P 		366.9
(1)
P 		437.2
(2.1)
P 		487.5
(3)
P 		435
(2.1)
P 		353
avr 129.6
(-3) 		267.4
(-0.6) 		334.6
(0.5) 		479.2
(3) 		468.5
(2.8) 		391.7
(1.5) 		350
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 50.4
(3)
P 		32.4
(-2.3)
P 		43.7
(1)
P 		30
(-3)
P 		20
B 47.9
(3)
P 		43.4
(0.2)
P 		47
(2.4)
P 		38.3
(-3)
P 		10
C 47.9
(-1.2)
P 		56.7
(0.9)
P 		65.7
(3)
P 		40
(-3)
P 		26
avr 48.7
(1.7) 		44.2
(0) 		52.1
(3) 		36.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 24.8
(-3)
P 		83.4
(0.1)
P 		68.4
(-0.7)
P 		137.7
(3)
P 		128.8
(2.5)
P 		87.7
(0.3)
P 		113
B 41.7
(-3)
P 		89.2
(-1.2)
P 		78.4
(-1.6)
P 		121.1
(0)
P 		199.5
(3)
P 		141.7
(0.8)
P 		158
C 49.7
(-3)
P 		91.4
(-0.7)
P 		93.4
(-0.6)
P 		87.9
(-0.9)
P 		157.7
(3)
P 		145.6
(2.3)
P 		108
avr 38.7
(-3) 		88
(-0.6) 		80.1
(-1) 		115.6
(0.7) 		162
(3) 		125
(1.2) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182793_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17394
Sequence Type Exemplar sequence
Representative Public ID C11G10.1 NCBI
Target Description C11G10.1 /REP_DB=WormBase Gene ID /WP=CE03015 /TR=Q17903 /GB=CAA91973.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078116 NCBI Caenorhabditis elegans C11G10.1 (C11G10.1) mRNA, complete cds. 11/11 None
C11G10.1 ENSEMBL cdna:known chromosome:CEL140:X:15157523:15160170:-1 gene:C11G10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027124 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15157522-15160170(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C11G10.1
Entrez Gene 182521 Entrez gene
SwissProt Q17903 EMBL-EBI
WormBase CE03015 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91973 Hypothetical protein C11G10.1 [Caenorhabditis elegans] ref|NP_510517.1| C11G10.1 [Caenorhabditis elegans] 5.0E-90
blast CAE63253 Hypothetical protein CBG07621 [Caenorhabditis briggsae] 1.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510517.1 1 43-65
C11G10.1 1 43-65
Sequence
Target Sequence 
>C. ELEGANS:182793_AT
acatgccagctttgaatttacctttttttatccaagtttttttcacaaaagcaatttcaa
taaccaaaaatctattttcggaaaaatggaaaatcctgaatcgaaaaatcaagattgtgg
atatttgtgcctgactatcactgccctattgattgcagttttctcagcaggcctaacgct
actaattgcaagctatatgtatcacggaagttatgaaccatttgagcttccgagtgaggt
cactacgtcaaatgtgaagcgccttatagtcggccacaagaaagtggtccttttcaaaat
tgacgctaaaaatcgatgctacattctgccggcaaaaatgtctaaggtaccctccttacc
tacctatagtgcaaaatatcaattcaattatttacaggaaatctcaatttctaaattctc
cttcgtcaattcccccttgacacaagaactattggagaacgttgctgaccacgaaggtgt
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGCCAGCTTTGAATTTACCTTT 353 107 18 Antisense
GACTATCACTGCCCTATTGATTGCA 297 373 150 Antisense
ATTGCAGTTTTCTCAGCAGGCCTAA 2 7 169 Antisense
CAGGCCTAACGCTACTAATTGCAAG 106 207 185 Antisense
GAACCATTTGAGCTTCCGAGTGAGG 458 335 232 Antisense
GTGAAGCGCCTTATAGTCGGCCACA 52 481 271 Antisense
AAATCGATGCTACATTCTGCCGGCA 625 117 327 Antisense
CCTCCTTACCTACCTATAGTGCAAA 68 267 368 Antisense
CAATTTCTAAATTCTCCTTCGTCAA 433 179 422 Antisense
GTCAATTCCCCCTTGACACAAGAAC 498 463 442 Antisense
GAACGTTGCTGACCACGAAGGTGTC 78 349 474 Antisense
Sequence Source Affymetrix Proprietary Database