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[182792_at]

Description F52C9.7 /REP_DB=WormBase Gene ID /WP=CE04619 /TR=Q20648 /GB=AAA81056.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 83      6grp_total > 48      4grp_total > 15      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 606.1
(-1.5)
P 		514.1
(-3)
P 		560
(-2.2)
P 		880.1
(3)
P 		366
B 740.7
(3)
P 		558.7
(-3)
P 		580.4
(-2.3)
P 		565.8
(-2.8)
P 		182
C 665.9
(3)
P 		575.6
(-3)
P 		624
(0.2)
P 		598.4
(-1.5)
P 		90
avr 670.9
(2.5) 		549.5
(-3) 		588.1
(-1.2) 		681.4
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 651
(3)
P 		544.1
(1)
P 		336.8
(-3)
P 		403.1
(-1.7)
P 		461.9
(-0.6)
P 		617.1
(2.4)
P 		314
B 626.7
(-0.2)
P 		504.6
(-1.9)
P 		421.2
(-3)
P 		454.6
(-2.5)
P 		433.1
(-2.8)
P 		859.6
(3)
P 		438
C 521.3
(-0.2)
P 		612.9
(1.6)
P 		407
(-2.5)
P 		380.4
(-3)
P 		425
(-2.1)
P 		685.4
(3)
P 		305
avr 599.7
(0.8) 		553.9
(-0) 		388.3
(-3) 		412.7
(-2.6) 		440
(-2.1) 		720.7
(3) 		332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 220.7
(3)
P 		111.6
(-3)
P 		146.4
(-1.1)
P 		128.8
(-2.1)
P 		109
B 236.2
(3)
P 		138
(-2.1)
P 		134.5
(-2.3)
P 		120.6
(-3)
P 		116
C 220.4
(3)
P 		165.5
(0.2)
P 		217.5
(2.9)
P 		100.9
(-3)
P 		120
avr 225.8
(3) 		138.4
(-1.8) 		166.1
(-0.3) 		116.8
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 120
(-0.7)
P 		193.5
(3)
P 		73.4
(-3)
P 		102.2
(-1.6)
P 		139.4
(0.3)
P 		150.3
(0.8)
P 		120
B 218.1
(0.2)
P 		168
(-1.2)
P 		102.3
(-3)
P 		120.4
(-2.5)
P 		175.9
(-1)
P 		320.5
(3)
P 		218
C 193.2
(1.6)
P 		187
(1.3)
P 		103.6
(-1.9)
P 		76.5
(-3)
P 		137.5
(-0.6)
P 		229.5
(3)
P 		153
avr 177.1
(0.6) 		182.8
(0.8) 		93.1
(-3) 		99.7
(-2.7) 		150.9
(-0.5) 		233.4
(3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6211
Sequence Type Exemplar sequence
Representative Public ID F52C9.7 NCBI
Target Description F52C9.7 /REP_DB=WormBase Gene ID /WP=CE04619 /TR=Q20648 /GB=AAA81056.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065733(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065733 NCBI Caenorhabditis elegans F52C9.7 (F52C9.7) mRNA, complete cds. 11/11 None
SNAP00000014750 ENSEMBL cdna:SNAP chromosome:CEL140:III:5308559:5311034:1 11/11 None
F52C9.7 ENSEMBL cdna:known chromosome:CEL140:III:5308559:5311061:1 gene:F52C9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014759 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014763 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5308557-5311033(+) 95.58 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C9.7
Entrez Gene 175730 Entrez gene
SwissProt Q20648 EMBL-EBI
WormBase CE04619 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15712_S_AT expressed protein at
ATH1-121501:267341_AT expressed protein at
CANINE:1586580_AT similar to CG2843-PA cfa
CANINE_2:CFA.12059.1.A1_S_AT similar to CG2843-PA cfa
CANINE_2:CFAAFFX.25338.1.S1_AT similar to CG2843-PA cfa
DROSOPHILA_2:1630931_AT dm
DROSGENOME1:145663_AT dm
CHICKEN:GGA.11990.1.S1_AT similar to hypothetical protein FLJ20291 gga
HG-U133_PLUS_2:218655_S_AT hypothetical protein FLJ20291 hs
HG-U133A:218655_S_AT hypothetical protein FLJ20291 hs
HG-U133A_2:218655_S_AT hypothetical protein FLJ20291 hs
HU35KSUBA:RC_AA076133_AT hypothetical protein FLJ20291 hs
HU35KSUBD:RC_H79861_AT hypothetical protein FLJ20291 hs
U133_X3P:G8923270_3P_A_AT hypothetical protein FLJ20291 hs
U133_X3P:HS.8928.0.S2_3P_AT hypothetical protein FLJ20291 hs
HG-U133_PLUS_2:222706_AT hypothetical protein FLJ20291 hs
HG-U133B:222706_AT hypothetical protein FLJ20291 hs
HG-U95B:47152_AT hypothetical protein FLJ20291 hs
HG-U95E:91910_AT hypothetical protein FLJ20291 hs
HG-U95E:91912_G_AT hypothetical protein FLJ20291 hs
HG-U95E:91914_AT Hypothetical protein FLJ20291 hs
MOUSE430_2:1431755_A_AT RIKEN cDNA 1300013D05 gene mm
MOE430B:1431755_A_AT RIKEN cDNA 1300013D05 gene mm
MG-U74BV2:110819_AT RIKEN cDNA 1300013D05 gene mm
MG-U74BV2:162828_AT RIKEN cDNA 1300013D05 gene mm
MOE430B:1428759_S_AT RIKEN cDNA 1300013D05 gene mm
MOUSE430_2:1428759_S_AT RIKEN cDNA 1300013D05 gene mm
MU19KSUBB:TC33409_AT RIKEN cDNA 1300013D05 gene (1300013D05Rik), mRNA mm
RAE230A:1374888_AT Similar to RIKEN cDNA 1300013D05 (predicted) rn
RAT230_2:1374888_AT Similar to RIKEN cDNA 1300013D05 (predicted) rn
RG-U34A:RC_AA800731_AT Similar to RIKEN cDNA 1300013D05 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4096 catalase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81056 Hypothetical protein F52C9.7 [Caenorhabditis elegans] ref|NP_498134.1| F52C9.7 [Caenorhabditis elegans] 3.0E-61
blast CAE56846 Hypothetical protein CBG24673 [Caenorhabditis briggsae] 4.0E-37
Sequence
Target Sequence 
>C. ELEGANS:182792_AT
agatctgccgacaaagcgagctcttcaagacagtttgattctcacattccacgtcacctg
cagcagcaacgaagtcgtcatgattcgagctcaggctcagaatctgagcacgaaactcgg
agcagtcaccgccgccggaatagtgatgatgacgagcgacaggatccgagaaagaagtca
tatggcttggttgagatgcgaaagcgaacagccgaggaacgtgaagaagagtcacgggcg
cccaccaaggagtacaagcttgtcaagattcccacaggacgtggtaccggcaatacgcca
agagagccgcgacgagcattgagtgaagcagagaaggcggctcggctcgccgaaatgcag
caggacaacgtgaaatggagggacgagattcgcgagagaaatgtcacaaaaggacggaaa
gaggatgatgaggagaaggaagaggcggataaaaatggatatgctccatcttttattaga
tctcaaatgcgcgaagcctgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATCTGCCGACAAAGCGAGCTCTT 705 65 775 Antisense
GACAGTTTGATTCTCACATTCCACG 258 369 803 Antisense
GTCGTCATGATTCGAGCTCAGGCTC 542 473 848 Antisense
CACGAAACTCGGAGCAGTCACCGCC 120 199 883 Antisense
GTCACCGCCGCCGGAATAGTGATGA 612 465 899 Antisense
GTGAAGAAGAGTCACGGGCGCCCAC 446 479 995 Antisense
GCTTGTCAAGATTCCCACAGGACGT 667 303 1032 Antisense
GACGTGGTACCGGCAATACGCCAAG 514 375 1052 Antisense
AGAGAGCCGCGACGAGCATTGAGTG 385 57 1075 Antisense
TCGGCTCGCCGAAATGCAGCAGGAC 19 607 1116 Antisense
GATCTCAAATGCGCGAAGCCTGTGA 27 419 1253 Antisense
Sequence Source Affymetrix Proprietary Database