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[182791_at]

Description ZC250.2 /REP_DB=WormBase Gene ID /WP=CE15155 /TR=O01878 /GB=AAB54234.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 50      4grp_high_8_8 > 28      6grp_total > 51      4grp_total > 28      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 109.8
(-1.3)
P 		137.6
(1)
P 		88.8
(-3)
M 		162.1
(3)
M 		73
B 116.8
(1.3)
A 		136.8
(3)
P 		68
(-3)
A 		126.8
(2.1)
P 		69
C 150.7
(3)
P 		119.4
(-1.2)
A 		106.2
(-3)
P 		141.2
(1.7)
P 		45
avr 125.8
(1.1) 		131.3
(1.7) 		87.7
(-3) 		143.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 143.5
(1)
P 		141.7
(0.9)
P 		184
(3)
P 		152.3
(1.4)
P 		113.9
(-0.5)
P 		63.2
(-3)
A 		121
B 148.1
(-0)
P 		134.2
(-0.7)
P 		215.4
(3)
P 		137.3
(-0.5)
P 		122
(-1.2)
P 		82.4
(-3)
P 		133
C 130.3
(-1.3)
P 		133.3
(-1.1)
P 		122.5
(-1.7)
P 		215.6
(3)
P 		131.4
(-1.2)
P 		96.2
(-3)
P 		119
avr 140.6
(0.9) 		136.4
(0.6) 		174
(3) 		168.4
(2.6) 		122.4
(-0.3) 		80.6
(-3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 40
(3)
P 		29.9
(-0.6)
P 		23.2
(-3)
M 		23.7
(-2.8)
M 		17
B 37.3
(3)
A 		33.8
(2)
P 		15.8
(-3)
A 		27
(0.1)
P 		22
C 49.9
(3)
P 		34.3
(-0.6)
A 		37
(0)
P 		23.8
(-3)
P 		26
avr 42.4
(3) 		32.7
(-0.3) 		25.3
(-2.8) 		24.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 26.5
(-1.1)
P 		50.4
(3)
P 		40.1
(1.2)
P 		38.6
(1)
P 		34.4
(0.3)
P 		15.4
(-3)
A 		35
B 51.5
(2.8)
P 		44.7
(0.9)
P 		52.3
(3)
P 		36.4
(-1.4)
P 		49.6
(2.3)
P 		30.7
(-3)
P 		22
C 48.3
(3)
P 		40.7
(0.3)
P 		31.2
(-3)
P 		43.4
(1.3)
P 		42.5
(1)
P 		32.2
(-2.6)
P 		17
avr 42.1
(2) 		45.3
(3) 		41.2
(1.7) 		39.5
(1.2) 		42.2
(2) 		26.1
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12391
Sequence Type Exemplar sequence
Representative Public ID ZC250.2 NCBI
Target Description ZC250.2 /REP_DB=WormBase Gene ID /WP=CE15155 /TR=O01878 /GB=AAB54234.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072119 NCBI Caenorhabditis elegans ZC250.2 (ZC250.2) mRNA, complete cds. 11/11 None
SNAP00000024585 ENSEMBL cdna:SNAP chromosome:CEL140:V:5796607:5797375:1 11/11 None
GENEFINDER00000024592 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5796269:5797375:1 11/11 None
ZC250.2 ENSEMBL cdna:known chromosome:CEL140:V:5795643:5797375:1 gene:ZC250.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5795642-5797375(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC250.2
Entrez Gene 178968 Entrez gene
SwissProt O01878 EMBL-EBI
WormBase CE15155 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603678_AT similar to beta 3-glycosyltransferase-like cfa
CANINE_2:CFA.14239.1.S1_AT similar to beta 3-glycosyltransferase-like cfa
CANINE_2:CFAAFFX.10739.1.S1_S_AT similar to beta 3-glycosyltransferase-like cfa
DROSOPHILA_2:1634686_AT dm
DROSGENOME1:142764_AT dm
HU35KSUBB:RC_AA007187_AT beta 3-glycosyltransferase-like hs
HU35KSUBB:RC_N74996_AT beta 3-glycosyltransferase-like hs
HU35KSUBD:RC_AA495968_AT beta 3-glycosyltransferase-like hs
U133_X3P:HS.13205.0.A2_3P_AT beta 3-glycosyltransferase-like hs
U133_X3P:HS.13205.0.A1_3P_AT beta 3-glycosyltransferase-like hs
HG-U133_PLUS_2:227083_AT beta 3-glycosyltransferase-like hs
HG-U133B:227083_AT beta 3-glycosyltransferase-like hs
HG-U133_PLUS_2:227100_AT beta 3-glycosyltransferase-like hs
HG-U133B:227100_AT beta 3-glycosyltransferase-like hs
HG-U95B:44278_AT beta 3-glycosyltransferase-like hs
HG-U95B:47927_AT beta 3-glycosyltransferase-like hs
HG-U95B:53811_AT beta 3-glycosyltransferase-like hs
HG-U95C:63377_AT beta 3-glycosyltransferase-like hs
HG-U133_PLUS_2:1566086_AT Beta 3-glycosyltransferase-like hs
HG-U133_PLUS_2:1566087_AT Beta 3-glycosyltransferase-like hs
HG-U95E:81255_AT Beta 3-glycosyltransferase-like hs
HU35KSUBD:RC_AA411767_AT Beta 3-glycosyltransferase-like hs
U133_X3P:HS2.407117.1.A1_3P_AT Beta 3-glycosyltransferase-like hs
MG-U74BV2:107474_AT gene model 1057, (NCBI) mm
MOE430B:1457043_AT PREDICTED: similar to beta 3-glycosyltransferase-like [Mus musculus], mRNA sequence mm
MOUSE430_2:1457043_AT PREDICTED: similar to beta 3-glycosyltransferase-like [Mus musculus], mRNA sequence mm
Protein Similarities
Method ID Description E-Value
blast AAB54234 Hypothetical protein ZC250.2 [Caenorhabditis elegans] ref|NP_504520.1| ZC250.2 [Caenorhabditis elegans] 0.0
blast AAB54234 Hypothetical protein ZC250.2 [Caenorhabditis elegans] ref|NP_504520.1| ZC250.2 [Caenorhabditis elegans] 1.0E-180
blast CAE64567 Hypothetical protein CBG09318 [Caenorhabditis briggsae] 1.0E-150
blast CAE64567 Hypothetical protein CBG09318 [Caenorhabditis briggsae] 1.0E-125
blast AAB54234 Hypothetical protein ZC250.2 [Caenorhabditis elegans] ref|NP_504520.1| ZC250.2 [Caenorhabditis elegans] 1.0E-119
blast CAE64567 Hypothetical protein CBG09318 [Caenorhabditis briggsae] 6.0E-96
blast NP_919299 beta 3-glycosyltransferase-like [Homo sapiens] gb|AAH68595.1| Beta 3-glycosyltransferase-like [Homo sapiens] 2.0E-70
Sequence
Target Sequence 
>C. ELEGANS:182791_AT
aaaacacttgggcatccgacgtgtcacgcatagagtactgtagcgacaaagaggatccgg
caattccaacaatcaatctaggagtcgacaatacggacagaggacattgtgcaaagacat
gggaaatattcagaagatttttgggaagttctggaaatggagcgaaatggcttgtagtag
ccgatgatgatacattgatgaatttcaaacggttgaagcaaatgttagagttatatgatt
ctggagataagataattattggcgagcgctatggatatggatttagtttgaatggtgaca
gtggatatgactatcccactggcggatctggaatgatattcacgcgctccgcagttgaat
ctttacttgcacaatgcccatcgtgtattgcaaatactgatccggatgatatgacgatcg
gaatttgtgcactaacagctggaattccaattgttcacgaatctagattacatcaagcga
gacctctagattatgctccggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACACTTGGGCATCCGACGTGTC 66 129 539 Antisense
GACGTGTCACGCATAGAGTACTGTA 647 377 556 Antisense
AGAGGATCCGGCAATTCCAACAATC 123 69 588 Antisense
GATATGACTATCCCACTGGCGGATC 658 423 842 Antisense
TCTGGAATGATATTCACGCGCTCCG 663 607 865 Antisense
CGCTCCGCAGTTGAATCTTTACTTG 574 255 883 Antisense
TTACTTGCACAATGCCCATCGTGTA 578 683 901 Antisense
GACGATCGGAATTTGTGCACTAACA 471 377 951 Antisense
GTGCACTAACAGCTGGAATTCCAAT 653 479 965 Antisense
GATTACATCAAGCGAGACCTCTAGA 275 431 1004 Antisense
GAGACCTCTAGATTATGCTCCGGAG 288 395 1017 Antisense
Sequence Source Affymetrix Proprietary Database