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[182790_at]

Description F10G2.3 /REP_DB=WormBase Gene ID /WP=CE09331 /TR=Q22955 /GB=AAG24059.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 83      6grp_total > 93      4grp_total > 54      6grp_highest_sub > 05      6grp_cgc > 99      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 579
1 2 3 4 range
A 603.5
(3)
P 		231.9
(-1.3)
P 		213.4
(-1.5)
P 		87.1
(-3)
A 		516
B 666.3
(3)
P 		267.8
(-1.2)
P 		202.4
(-1.9)
P 		93.4
(-3)
A 		573
C 581.8
(3)
P 		232.6
(-1.7)
P 		223.9
(-1.8)
P 		137.6
(-3)
A 		444
avr 617.2
(3) 		244.1
(-1.4) 		213.2
(-1.7) 		106
(-3) 		511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 380.5
(-2.6)
P 		360.5
(-3)
P 		363
(-3)
P 		441.9
(-1.5)
P 		682.7
(3)
P 		481.1
(-0.8)
P 		322
B 415.5
(-3)
P 		466.9
(-1.1)
P 		455.8
(-1.5)
P 		449.4
(-1.8)
P 		579.3
(3)
P 		434.4
(-2.3)
P 		164
C 418.4
(-3)
P 		541.3
(2.8)
P 		453.4
(-1.3)
P 		442.8
(-1.8)
P 		545.3
(3)
P 		449.2
(-1.5)
P 		127
avr 404.8
(-3) 		456.2
(-1.4) 		424.1
(-2.4) 		444.7
(-1.8) 		602.4
(3) 		454.9
(-1.5) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 219.7
(3)
P 		50.3
(-1.9)
P 		55.8
(-1.8)
P 		12.7
(-3)
A 		207
B 212.5
(3)
P 		66.1
(-1.6)
P 		46.9
(-2.2)
P 		19.9
(-3)
A 		193
C 192.6
(3)
P 		66.9
(-1.5)
P 		78
(-1.1)
P 		23.2
(-3)
A 		169
avr 208.3
(3) 		61.1
(-1.7) 		60.2
(-1.7) 		18.6
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 70.1
(-3)
P 		128.2
(-0.4)
P 		79.1
(-2.6)
P 		112.1
(-1.1)
P 		206
(3)
P 		117.1
(-0.9)
P 		136
B 144.6
(-1.4)
P 		155.4
(-0.8)
P 		110.7
(-3)
P 		119
(-2.6)
P 		235.4
(3)
P 		162
(-0.5)
P 		125
C 155.1
(1.5)
P 		165.2
(2.2)
P 		115.4
(-1.2)
P 		89
(-3)
P 		176.5
(3)
P 		150.4
(1.2)
P 		88
avr 123.3
(-1.8) 		149.6
(-0.2) 		101.7
(-3) 		106.7
(-2.7) 		206
(3) 		143.2
(-0.6) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12360
Sequence Type Exemplar sequence
Representative Public ID F10G2.3 NCBI
Target Description F10G2.3 /REP_DB=WormBase Gene ID /WP=CE09331 /TR=Q22955 /GB=AAG24059.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072464 NCBI Caenorhabditis elegans C-type LECtin family member (clec-7) (clec-7) mRNA, complete cds. 11/11 None
SNAP00000010638 ENSEMBL cdna:SNAP chromosome:CEL140:V:7331008:7332410:1 11/11 None
GENEFINDER00000010645 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7331008:7334241:1 10/11 None
F10G2.3 ENSEMBL cdna:known chromosome:CEL140:V:7330990:7332594:1 gene:F10G2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7331008-7332411(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-7
Ensembl F10G2.3
Entrez Gene 184314 Entrez gene
SwissProt Q22955 EMBL-EBI
WormBase CE09331 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504865 C-type LECtin family member (clec-7) [Caenorhabditis elegans] gb|AAG24059.1| Hypothetical protein F10G2.3 [Caenorhabditis elegans] 0.0
blast NP_498022 C-type LECtin family member (clec-5) [Caenorhabditis elegans] gb|AAA62570.2| C-type lectin protein 5 [Caenorhabditis elegans] 1.0E-128
blast NP_498022 C-type LECtin family member (clec-5) [Caenorhabditis elegans] gb|AAA62570.2| C-type lectin protein 5 [Caenorhabditis elegans] 1.0E-125
blast CAE65367 Hypothetical protein CBG10312 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 9.4E-8
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-7
Pfam IPR000859 EMBL-EBI CUB 1.4E-21
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-7
Pfam IPR000859 EMBL-EBI CUB 1.4E-21
Pfam IPR000859 EMBL-EBI CUB 5.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182790_AT
aatgggtcgatggcttaccttgggaatacaaaaatattgatttaacagggccacgcggtg
gggactgcatggtaatgtccactaggcctccaagtcctgtagcagcaggatactggtttg
gcgctagctgtacagacgaacgaaattttatttgtaaacgccctgcgggactgcaatgtg
ttggaacaccgccatctgtaactatatctcctattcaagacaatccatctttctgcaatt
ccacaaatctattggctcccggtgttgtcacatctcccaacttcccacgtaactacaata
acaatgcattctgcacgtaccaattgtctacactaggatcatataacatattgctgagat
ttgcaccattttcccttggtacttctgattatgtgatagtttacgatggagaatcggcaa
gtagtccggttattggaaattatagtggaaccttggtgccgtttagcttaatttcaagtt
cgaacaatttgctagtggtatttaatggaaataccggtggccagggattcagtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGGTCGATGGCTTACCTTGGGA 551 163 701 Antisense
GCATGGTAATGTCCACTAGGCCTCC 554 309 767 Antisense
GCAGGATACTGGTTTGGCGCTAGCT 362 311 805 Antisense
ATTTGTAAACGCCCTGCGGGACTGC 488 11 850 Antisense
CACCGCCATCTGTAACTATATCTCC 418 201 887 Antisense
TCCATCTTTCTGCAATTCCACAAAT 515 591 924 Antisense
TCCACAAATCTATTGGCTCCCGGTG 297 587 940 Antisense
TCTGCACGTACCAATTGTCTACACT 306 609 1010 Antisense
CATTTTCCCTTGGTACTTCTGATTA 676 213 1067 Antisense
AGTGGAACCTTGGTGCCGTTTAGCT 268 31 1144 Antisense
TACCGGTGGCCAGGGATTCAGTGCT 440 643 1212 Antisense
Sequence Source Affymetrix Proprietary Database