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[182788_s_at]

Description C29A12.1 /REP_DB=WormBase Gene ID /WP=CE05326 /TR=Q18292 /GB=CAA98244.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 26.9
(-1.6)
A 		6.1
(-2.8)
A 		2.3
(-3)
A 		111.2
(3)
A 		109
B 10.8
(-2.3)
A 		2.4
(-3)
A 		22.1
(-1.4)
A 		76.3
(3)
A 		74
C 2.9
(-3)
A 		3.2
(-3)
A 		43.2
(-0.4)
A 		94.7
(3)
P 		92
avr 13.5
(-2.4) 		3.9
(-3) 		22.5
(-1.8) 		94.1
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 5.4
(-3)
A 		11.4
(-2.9)
A 		79.2
(-1.3)
A 		19.5
(-2.7)
A 		226
(2)
P 		272.2
(3)
P 		267
B 2.9
(-3)
A 		29.8
(-2.5)
A 		17.7
(-2.7)
A 		34
(-2.4)
A 		258.4
(1.6)
P 		334.2
(3)
P 		331
C 4.7
(-3)
A 		6.7
(-3)
A 		6.2
(-3)
A 		81
(-1.5)
A 		228.2
(1.5)
P 		305.2
(3)
P 		301
avr 4.3
(-3) 		16
(-2.8) 		34.4
(-2.4) 		44.8
(-2.2) 		237.5
(1.7) 		303.9
(3) 		300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.8
(0.5)
A 		1.3
(-2.7)
A 		0.6
(-3)
A 		16.3
(3)
A 		16
B 3.4
(-1.9)
A 		0.6
(-3)
A 		5.1
(-1.3)
A 		16.3
(3)
A 		16
C 1
(-3)
A 		0.9
(-3)
A 		15.1
(2.6)
A 		16
(3)
P 		15
avr 4.7
(-1.5) 		0.9
(-3) 		6.9
(-0.6) 		16.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 1
(-3)
A 		4.1
(-2.7)
A 		17.3
(-1.5)
A 		5
(-2.6)
A 		68.2
(3)
P 		66.3
(2.8)
P 		67
B 1
(-3)
A 		9.9
(-2.6)
A 		4.3
(-2.8)
A 		9
(-2.6)
A 		105
(2)
P 		124.6
(3)
P 		124
C 1.8
(-3)
A 		2.1
(-3)
A 		1.6
(-3)
A 		16.3
(-2.1)
A 		73.8
(1.3)
P 		102.2
(3)
P 		101
avr 1.3
(-3) 		5.4
(-2.7) 		7.7
(-2.6) 		10.1
(-2.5) 		82.3
(2) 		97.7
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182788_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13670
Sequence Type Exemplar sequence
Representative Public ID C29A12.1 NCBI
Target Description C29A12.1 /REP_DB=WormBase Gene ID /WP=CE05326 /TR=Q18292 /GB=CAA98244.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073364 NCBI Caenorhabditis elegans C29A12.1 (C29A12.1) mRNA, complete cds. 11/11 A 
SNAP00000008261 ENSEMBL cdna:SNAP chromosome:CEL140:V:10815030:10815975:-1 11/11 None
GENEFINDER00000008269 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10815030:10815975:-1 11/11 None
C29A12.1 ENSEMBL cdna:known chromosome:CEL140:V:10814994:10815980:-1 gene:C29A12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10815029-10815975(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29A12.1
Entrez Gene 179501 Entrez gene
SwissProt Q18292 EMBL-EBI
WormBase CE05326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98244 Hypothetical protein C29A12.1 [Caenorhabditis elegans] ref|NP_505765.1| C29A12.1 [Caenorhabditis elegans] 1.0E-134
blast CAE64900 Hypothetical protein CBG09715 [Caenorhabditis briggsae] 5.0E-27
Sequence
Target Sequence 
>C. ELEGANS:182788_S_AT
tggatggatggggccggaacactcactgacgagcttgaagatttttccatacgtgttcac
gtggcagaaactgtgtcggagatcaatcctgccgacaatgctccagttatggaatgcctt
gttgatgtcgtcaatgcaataaattccatcacacaaaatatgtacaaaattgtcaataac
gaccagaacaagcgattgttcatcgcaaagtcaaatgctcaaagaaagcatgcaaagtta
ttgaatgagaaggaaattgttatgagacgactggagcaattgaagaaagagcagctgaag
aaaacaatggaatccgaaaaaaaactgagagatcttcaagctgaaaatatccggcgagat
tttcaagagcaggctcgttcacaagctatgagagatcacgaagtttaccttgcttatgcg
gaagccattaattctgtaaacgttacacctcatttcgaacattttgagacccctgcggaa
gacatttctacaccctttgaatcgcccaatcttccgagaaaacgtcgctctcgcagcctt
ggccggaaagttttgggatctgtcaagaaaacaatccgcagaagcgtatcagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATGGATGGGGCCGGAACACTCA 188 549 151 Antisense
GGAACACTCACTGACGAGCTTGAAG 159 529 166 Antisense
AAGATTTTTCCATACGTGTTCACGT 430 153 188 Antisense
GTTCACGTGGCAGAAACTGTGTCGG 203 437 205 Antisense
ACTGTGTCGGAGATCAATCCTGCCG 468 97 220 Antisense
TCCTGCCGACAATGCTCCAGTTATG 537 585 237 Antisense
ATGGAATGCCTTGTTGATGTCGTCA 342 53 259 Antisense
AATATCCGGCGAGATTTTCAAGAGC 353 173 496 Antisense
TCTCGCAGCCTTGGCCGGAAAGTTT 457 611 679 Antisense
GGCCGGAAAGTTTTGGGATCTGTCA 551 477 691 Antisense
AACAATCCGCAGAAGCGTATCAGCT 54 135 720 Antisense
Sequence Source Affymetrix Proprietary Database