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[182786_s_at]

Description K05F6.7 /REP_DB=WormBase Gene ID /WP=CE17165 /TR=O44865 /GB=AAB95027.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 28.5
(-2)
A 		47.9
(-0.7)
A 		13.9
(-3)
A 		103.8
(3)
P 		90
B 33.8
(3)
A 		29.1
(1.8)
A 		10.7
(-3)
A 		14.9
(-1.9)
A 		23
C 8
(-3)
A 		46.5
(-0.7)
A 		28
(-1.8)
A 		106.6
(3)
A 		99
avr 23.4
(-2.4) 		41.2
(-0.5) 		17.5
(-3) 		75.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 81.7
(-0.1)
A 		5
(-3)
A 		40.3
(-1.7)
A 		6.7
(-2.9)
A 		18.6
(-2.5)
A 		162.1
(3)
P 		157
B 12.3
(-2.8)
A 		44.8
(-1.5)
A 		7.6
(-3)
A 		32.2
(-2)
A 		48.5
(-1.4)
A 		158.2
(3)
P 		151
C 50.6
(-1.2)
A 		11.6
(-2.8)
A 		9.1
(-2.9)
A 		6.6
(-3)
A 		30.8
(-2)
A 		153
(3)
P 		146
avr 48.2
(-1.6) 		20.5
(-2.8) 		19
(-2.8) 		15.2
(-3) 		32.6
(-2.3) 		157.8
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.4
(0.5)
A 		10.4
(0.5)
A 		3.6
(-3)
A 		15.2
(3)
P 		12
B 10.8
(3)
A 		7.2
(0.4)
A 		2.5
(-3)
A 		3.2
(-2.5)
A 		8
C 2.7
(-3)
A 		13.4
(1.2)
A 		9.8
(-0.2)
A 		18
(3)
A 		15
avr 8
(-0.6) 		10.3
(1.4) 		5.3
(-3) 		12.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 15.1
(-0.9)
A 		1.8
(-3)
A 		8.8
(-1.9)
A 		1.7
(-3)
A 		5.6
(-2.4)
A 		39.5
(3)
P 		38
B 4.3
(-2.7)
A 		14.9
(-1.6)
A 		1.9
(-3)
A 		8.5
(-2.3)
A 		19.7
(-1.1)
A 		59
(3)
P 		57
C 18.7
(-0.9)
A 		3.5
(-2.7)
A 		2.3
(-2.9)
A 		1.3
(-3)
A 		10
(-2)
A 		51.2
(3)
P 		50
avr 12.7
(-1.8) 		6.7
(-2.6) 		4.3
(-2.9) 		3.8
(-3) 		11.8
(-2) 		49.9
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182786_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5206
Sequence Type Exemplar sequence
Representative Public ID K05F6.7 NCBI
Target Description K05F6.7 /REP_DB=WormBase Gene ID /WP=CE17165 /TR=O44865 /GB=AAB95027.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061594 NCBI Caenorhabditis elegans K05F6.7 (K05F6.7) mRNA, complete cds. 11/11 None
SNAP00000019319 ENSEMBL cdna:SNAP chromosome:CEL140:II:1555263:1556430:-1 11/11 None
GENEFINDER00000019332 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1555263:1556313:-1 11/11 None
K05F6.7 ENSEMBL cdna:known chromosome:CEL140:II:1555263:1556313:-1 gene:K05F6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019321 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019334 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1555261-1558957(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F6.7
Entrez Gene 173529 Entrez gene
SwissProt O44865 EMBL-EBI
WormBase CE28588 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6457 protein folding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB95027 Hypothetical protein K05F6.7 [Caenorhabditis elegans] ref|NP_493995.1| K05F6.7 [Caenorhabditis elegans] 0.0
blast AAK31516 Hypothetical protein F36H5.5 [Caenorhabditis elegans] ref|NP_494071.1| F36H5.5 [Caenorhabditis elegans] 4.0E-62
blast AAK31516 Hypothetical protein F36H5.5 [Caenorhabditis elegans] ref|NP_494071.1| F36H5.5 [Caenorhabditis elegans] 5.0E-62
blast AAC67475 Hypothetical protein F58E1.14 [Caenorhabditis elegans] ref|NP_494048.1| F58E1.14 [Caenorhabditis elegans] 5.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000019319 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:182786_S_AT
aggactgaacatttcacagctcgatatatatttcaccaccgaaattaagaatgccgttac
tattatcgacacgtttccatctgttgatgagcttttcctgggtggcgaatcgaatcaaca
gttgggctccactcaatcaattgcactgtaccacgttctgcctcagaacttcagagagct
caccttagcagtcaacgtgtcattaaatgacctattgctaactaattgctctttcattaa
cgtacacagtcgacagttaacggaacaggatatcaatttgtttctgaagcattgggcagt
cggattgaaaccagaactcgaattttttcgttgtgaaaaagattcacacattttcaacaa
aaacgcaatattggaaggaattgctcacgagttcgcgccgattgacaggaggtttaaagt
gtatgatatgagacggaggaatcgttctcaagacggaggaatcgatatacacttgcctca
ag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACTGAACATTTCACAGCTCGAT 189 55 945 Antisense
CAGCTCGATATATATTTCACCACCG 566 203 961 Antisense
TATCGACACGTTTCCATCTGTTGAT 175 659 1008 Antisense
TTGATGAGCTTTTCCTGGGTGGCGA 308 703 1028 Antisense
AACAGTTGGGCTCCACTCAATCAAT 360 137 1061 Antisense
GTACCACGTTCTGCCTCAGAACTTC 348 457 1092 Antisense
GAGCTCACCTTAGCAGTCAACGTGT 321 385 1120 Antisense
GACCTATTGCTAACTAATTGCTCTT 378 383 1153 Antisense
ATTGCTCTTTCATTAACGTACACAG 546 5 1169 Antisense
AGTTCGCGCCGATTGACAGGAGGTT 656 61 1334 Antisense
GGAATCGATATACACTTGCCTCAAG 493 533 1402 Antisense
Sequence Source Affymetrix Proprietary Database