[Home] | [Total List]

[182785_at]

Description R04A9.3 /REP_DB=WormBase Gene ID /WP=CE04790 /TR=Q21692 /GB=AAA83285.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 23      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 360.2
(3)
P 		191
(-0.7)
P 		88.2
(-3)
P 		347
(2.7)
P 		272
B 365.5
(3)
P 		222.1
(-0.8)
P 		136.1
(-3)
P 		305.9
(1.4)
P 		229
C 365.1
(3)
P 		162.5
(-3)
P 		221.9
(-1.2)
P 		203.2
(-1.8)
P 		203
avr 363.6
(3) 		191.9
(-1.8) 		148.7
(-3) 		285.4
(0.8) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 372
1 2 3 4 5 6 range
A 525.2
(3)
P 		316.5
(-0.4)
P 		332.1
(-0.1)
P 		285.2
(-0.9)
P 		202.3
(-2.3)
P 		156.8
(-3)
P 		368
B 354.3
(1.7)
P 		322
(0.9)
P 		402.6
(3)
P 		234
(-1.4)
P 		174.7
(-3)
P 		210.4
(-2.1)
P 		228
C 263
(-1)
P 		310.9
(-0.1)
P 		482.6
(3)
P 		407
(1.6)
P 		153.2
(-3)
P 		182.5
(-2.5)
P 		329
avr 380.8
(2.3) 		316.5
(0.7) 		405.8
(3) 		308.7
(0.5) 		176.7
(-3) 		183.2
(-2.8) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 131.1
(3)
P 		41.5
(-2)
P 		23.1
(-3)
P 		50.8
(-1.5)
P 		108
B 116.6
(3)
P 		54.8
(-1.4)
P 		31.5
(-3)
P 		65.2
(-0.6)
P 		85
C 120.8
(3)
P 		46.7
(-2.1)
P 		77.4
(-0)
P 		34.3
(-3)
P 		87
avr 122.8
(3) 		47.7
(-2.7) 		44
(-3) 		50.1
(-2.5) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 96.8
(1.7)
P 		112.6
(3)
P 		72.3
(-0.3)
P 		72.3
(-0.3)
P 		61
(-1.2)
P 		38.2
(-3)
P 		74
B 123.3
(3)
P 		107.2
(1.4)
P 		97.8
(0.5)
P 		62
(-3)
P 		71
(-2.1)
P 		78.5
(-1.4)
P 		61
C 97.5
(0.9)
P 		94.9
(0.7)
P 		122.8
(3)
P 		81.9
(-0.4)
P 		49.6
(-3)
P 		61.1
(-2.1)
P 		73
avr 105.9
(3) 		104.9
(2.9) 		97.6
(1.9) 		72.1
(-1.4) 		60.5
(-2.8) 		59.3
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182785_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18135
Sequence Type Exemplar sequence
Representative Public ID R04A9.3 NCBI
Target Description R04A9.3 /REP_DB=WormBase Gene ID /WP=CE04790 /TR=Q21692 /GB=AAA83285.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075692 NCBI Caenorhabditis elegans R04A9.3 (R04A9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000016349 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:377391:380569:-1 11/11 None
R04A9.3 ENSEMBL cdna:known chromosome:CEL140:X:377391:380569:-1 gene:R04A9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:377390-380569(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R04A9.3
Entrez Gene 187563 Entrez gene
SwissProt Q21692 EMBL-EBI
WormBase CE35747 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508093 R04A9.3 [Caenorhabditis elegans] gb|AAA83285.2| Hypothetical protein R04A9.3 [Caenorhabditis elegans] 1.0E-152
blast NP_508093 R04A9.3 [Caenorhabditis elegans] gb|AAA83285.2| Hypothetical protein R04A9.3 [Caenorhabditis elegans] 1.0E-149
Sequence
Target Sequence 
>C. ELEGANS:182785_AT
cgtctgtctgctcaaggcattcaaaaaatcattgagaaagttccggtgaatgtgaaaaat
gtttttcggagtaaggccaagtttttatttgttgaagtatcgtataattttagttcacta
atgtttgttattgatccttcgaataccaaccgttttgtttgtgaaaacaacgtcaaggaa
ataaccatgacttcatatacagaagaaacgacttacttttttcactttatagataacgat
tggatgaaccagcttgtctctttgaaatggacaaaatcggaatgtatgaatttatttgtt
tgtcttgatgagcgaaactatacaaaacattataaaacttttggattattacccaaagaa
acaacacggcaactatcaaacggaagggaacttttgacttttaaatatcagcctccaact
acactaacatccattgatgattccgaaaattcggacgacgattcggacgatgaaaaaatt
gattcaaataatgcggaacgtgaagaacttttgctagtagagaatgaactaaaacggcaa
aataacgaagataccagttcagaaagagaatgctcccagccgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCTGTCTGCTCAAGGCATTCAAA 510 245 193 Antisense
CTAATGTTTGTTATTGATCCTTCGA 305 225 310 Antisense
GATCCTTCGAATACCAACCGTTTTG 482 413 325 Antisense
GACTTACTTTTTTCACTTTATAGAT 97 373 402 Antisense
GATGAACCAGCTTGTCTCTTTGAAA 262 413 435 Antisense
AACAACACGGCAACTATCAAACGGA 644 133 552 Antisense
GACTTTTAAATATCAGCCTCCAACT 546 369 588 Antisense
CTCCAACTACACTAACATCCATTGA 30 237 605 Antisense
AATTCGGACGACGATTCGGACGATG 254 175 640 Antisense
GCGGAACGTGAAGAACTTTTGCTAG 633 293 685 Antisense
CAGAAAGAGAATGCTCCCAGCCGTG 439 205 752 Antisense
Sequence Source Affymetrix Proprietary Database