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[182783_at]

Description C49A9.3 /REP_DB=WormBase Gene ID /WP=CE27110 /TR=O44153 /GB=AAK29791.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_high_8_8 > 41      6grp_highest_nonorm > 80      6grp_total > 41      4grp_total > 54      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 295.7
(3)
P 		150.7
(-0.2)
P 		147.6
(-0.3)
P 		27.1
(-3)
A 		269
B 203.3
(1.7)
P 		240.2
(3)
P 		138.4
(-0.6)
P 		71.7
(-3)
P 		169
C 367.3
(3)
P 		105.4
(-3)
P 		203.8
(-0.7)
P 		106.9
(-3)
P 		262
avr 288.8
(3) 		165.4
(-0.4) 		163.3
(-0.4) 		68.6
(-3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 95.6
(-2.7)
P 		224.6
(-0.6)
P 		433.4
(3)
P 		244.5
(-0.2)
P 		116.9
(-2.4)
P 		80.7
(-3)
P 		353
B 267.8
(3)
P 		191
(0.3)
P 		266.7
(3)
P 		212.8
(1.1)
P 		165.3
(-0.6)
P 		96.2
(-3)
P 		172
C 225.2
(2.1)
P 		210.5
(1.4)
P 		210
(1.4)
P 		245.9
(3)
P 		139.2
(-1.9)
P 		114.1
(-3)
P 		132
avr 196.2
(-0.1) 		208.7
(0.2) 		303.4
(3) 		234.4
(1) 		140.5
(-1.7) 		97
(-3) 		206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 107.7
(3)
P 		32.7
(-1.3)
P 		38.6
(-1)
P 		4
(-3)
A 		104
B 64.8
(3)
P 		59.3
(2.3)
P 		32.1
(-1)
P 		15.3
(-3)
P 		50
C 121.6
(3)
P 		30.3
(-2.3)
P 		71
(0.1)
P 		18
(-3)
P 		104
avr 98
(3) 		40.8
(-1) 		47.2
(-0.6) 		12.4
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 17.6
(-3)
P 		79.9
(1.9)
P 		94.4
(3)
P 		62
(0.5)
P 		35.3
(-1.6)
P 		19.6
(-2.8)
P 		77
B 93.2
(3)
P 		63.6
(-0.1)
P 		64.8
(0)
P 		56.4
(-0.9)
P 		67.2
(0.3)
P 		35.9
(-3)
P 		57
C 83.5
(3)
P 		64.2
(0.4)
P 		53.4
(-1)
P 		49.4
(-1.5)
P 		45
(-2.1)
P 		38.2
(-3)
P 		45
avr 64.8
(2.1) 		69.2
(2.7) 		70.9
(3) 		55.9
(0.7) 		49.2
(-0.3) 		31.2
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11094
Sequence Type Exemplar sequence
Representative Public ID C49A9.3 NCBI
Target Description C49A9.3 /REP_DB=WormBase Gene ID /WP=CE27110 /TR=O44153 /GB=AAK29791.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068535 NCBI Caenorhabditis elegans C49A9.3 (C49A9.3) mRNA, complete cds. 11/11 None
SNAP00000001925 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6222346:6224890:1 9/11 None
C49A9.3 ENSEMBL cdna:known chromosome:CEL140:IV:6222073:6224951:1 gene:C49A9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6222396-6224896(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A9.3
Entrez Gene 177385 Entrez gene
SwissProt O44153 EMBL-EBI
WormBase CE31451 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29791 Hypothetical protein C49A9.3 [Caenorhabditis elegans] ref|NP_500936.2| C49A9.3 [Caenorhabditis elegans] 0.0
blast T32522 hypothetical protein C49A9.3 - Caenorhabditis elegans 0.0
blast AAK29789 Hypothetical protein C49A9.2 [Caenorhabditis elegans] ref|NP_500937.1| C49A9.2 [Caenorhabditis elegans] 3.0E-88
blast AAK29789 Hypothetical protein C49A9.2 [Caenorhabditis elegans] ref|NP_500937.1| C49A9.2 [Caenorhabditis elegans] 6.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 3.5E-59
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 1.2E-76
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 3.5E-59
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 3.1E-67
Sequence
Target Sequence 
>C. ELEGANS:182783_AT
tattgccaaagcctgtcataacatcaattggaaaaataatatattttgaagcaaatgaaa
tcaagaaaaatcaaccaatgtcatcagagactcaaggccagagagaaaaagttttaggga
ctggattccaaaagaagactgaaaaagtgatgaatcaaagagctgtggttctcaaatttg
ttgaaaatcggtactatgtgtggaacatagacttgaaaaaagagtgcgtgctcaagtttg
acgagtacccattggaaaaaggccatttttttgttggagattttgtggattgtaaaacgg
gaaaatggatttgtatcaaatacgtgaaaccaattgatggattcattgatggaggactca
atgttcgtgaaaatatttatttcactattacgcttgaacagtttccaactacagaagatg
ctaatagaagaggttctgcattttctgaatatttcggagaagttttcgacggaaagtatg
caaatactaaaataaccaaagaattgattggaagaaaagcaaatgttgaacggcgatcta
ttgcaagaggggaatacgtttggacggtcgtcaaaacattcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGCCAAAGCCTGTCATAACATC 167 661 827 Antisense
GAAAAATCAACCAATGTCATCAGAG 527 355 891 Antisense
GTCATCAGAGACTCAAGGCCAGAGA 97 467 906 Antisense
GAATCAAAGAGCTGTGGTTCTCAAA 598 327 978 Antisense
GAAAATCGGTACTATGTGTGGAACA 710 353 1009 Antisense
AAGAGTGCGTGCTCAAGTTTGACGA 159 153 1046 Antisense
CAAGTTTGACGAGTACCCATTGGAA 241 183 1059 Antisense
ATTACGCTTGAACAGTTTCCAACTA 358 13 1213 Antisense
GAACGGCGATCTATTGCAAGAGGGG 55 349 1354 Antisense
GCAAGAGGGGAATACGTTTGGACGG 29 315 1369 Antisense
TGGACGGTCGTCAAAACATTCCCAC 529 509 1387 Antisense
Sequence Source Affymetrix Proprietary Database