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[182780_at] 7TM chemoreceptor, srw family

Description T08G3.10 /REP_DB=WormBase Gene ID /WP=CE18941 /TR=Q9XU48 /GB=CAB05799.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 10      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 1
(-3)
A 		6
(0.6)
A 		4
(-0.8)
A 		9.3
(3)
A 		8
B 2
(-3)
A 		3.8
(-2.7)
A 		5.5
(-2.4)
A 		39.8
(3)
A 		38
C 5
(-2.4)
A 		4.5
(-2.5)
A 		1.6
(-3)
A 		38.5
(3)
A 		37
avr 2.7
(-3) 		4.8
(-2.5) 		3.7
(-2.8) 		29.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 5.9
(1.5)
A 		3.5
(-1.3)
A 		7.2
(3)
A 		2
(-3)
A 		5.2
(0.7)
A 		5.8
(1.4)
A 		5
B 2.4
(-2.6)
A 		4.9
(3)
A 		4.1
(1.2)
A 		4
(1)
A 		3
(-1.2)
A 		2.2
(-3)
A 		3
C 3.1
(-1)
A 		7
(3)
A 		4.8
(0.8)
A 		5
(1)
A 		1.1
(-3)
A 		1.6
(-2.5)
A 		6
avr 3.8
(-1.2) 		5.1
(2.2) 		5.4
(3) 		3.7
(-1.4) 		3.1
(-3) 		3.2
(-2.7) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.4
(-3)
A 		1.3
(2.4)
A 		1.1
(1.2)
A 		1.4
(3)
A 		1
B 0.6
(-3)
A 		0.9
(-2.8)
A 		1.3
(-2.5)
A 		8.5
(3)
A 		8
C 1.6
(-2)
A 		1.3
(-2.3)
A 		0.6
(-3)
A 		6.5
(3)
A 		6
avr 0.9
(-3) 		1.2
(-2.6) 		1
(-2.9) 		5.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(0.3)
A 		1.2
(0.8)
A 		1.6
(3)
A 		0.5
(-3)
A 		1.6
(3)
A 		1.4
(1.9)
A 		1
B 0.8
(-3)
A 		1.6
(3)
A 		1
(-1.5)
A 		1.1
(-0.8)
A 		1.2
(-0)
A 		0.8
(-3)
A 		1
C 1.2
(-0)
A 		2.1
(3)
A 		1.2
(-0)
A 		1
(-0.7)
A 		0.3
(-3)
A 		0.5
(-2.3)
A 		2
avr 1
(-2.1) 		1.6
(3) 		1.3
(0.4) 		0.9
(-3) 		1
(-2.1) 		0.9
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13943
Sequence Type Exemplar sequence
Representative Public ID T08G3.10 NCBI
Target Description T08G3.10 /REP_DB=WormBase Gene ID /WP=CE18941 /TR=Q9XU48 /GB=CAB05799.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074765(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074765 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-35) (srw-35) mRNA, complete cds. 11/11 None
T08G3.10 ENSEMBL cdna:known chromosome:CEL140:V:16474024:16475979:1 gene:T08G3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16474023-16475979(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-35
Ensembl T08G3.10
Entrez Gene 188301 Entrez gene
SwissProt Q9XU48 EMBL-EBI
WormBase CE38220 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05799 Hypothetical protein T08G3.10 [Caenorhabditis elegans] ref|NP_507166.2| Serpentine Receptor, class W family member (srw-35) [Caenorhabditis elegans] 0.0
blast CAB03410 Hypothetical protein T26H5.5 [Caenorhabditis elegans] emb|CAB04856.1| Hypothetical protein T26H5.5 [Caenorhabditis elegans] ref|NP_506844.1| Serpentine Receptor, class W family member (srw-33) [Caenorhabditis elegans] 4.0E-63
blast CAB03410 Hypothetical protein T26H5.5 [Caenorhabditis elegans] emb|CAB04856.1| Hypothetical protein T26H5.5 [Caenorhabditis elegans] ref|NP_506844.1| Serpentine Receptor, class W family member (srw-33) [Caenorhabditis elegans] 2.0E-61
blast CAB07190 Hypothetical protein F14F8.6 [Caenorhabditis elegans] ref|NP_507223.1| Serpentine Receptor, class W family member (srw-44) [Caenorhabditis elegans] 4.0E-61
blast CAB07190 Hypothetical protein F14F8.6 [Caenorhabditis elegans] ref|NP_507223.1| Serpentine Receptor, class W family member (srw-44) [Caenorhabditis elegans] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 2.0E-29
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 2.0E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507166.2 7 30-52,59-81,126-145,158-180,223-245,266-288,303-325
T08G3.10 7 30-52,59-81,126-145,165-187,230-252,273-295,310-332
Sequence
Target Sequence 
>C. ELEGANS:182780_AT
aaaatggcattcggcttcttatctctgtaacagctgccattttgccgtctggtgtcacga
catatttcgaagtgactcttaaagaaaccaacaatatttggactcctccacccaattgtc
acaactttccgagcaacttttctcaaatcgaatacgcaattgaaactactaatttctata
acactttgcaacttgttgaaggaatattttttaaaataattccatcaataattctgcaaa
ctgctactatattcttggtgatgaaactgaaaaagactaaaatattagttaatcaaaaag
ttagaagcacaaccgacagagatcgatctacaaaattggtgaatttcatgtcaatttcat
ttttgattgctattctaccacatggtatcttatatattattgatgcttacttgaatcata
tacttggtttttcaatattgattgtacgatttgcaaccatttttcaatttataaacacta
tcaatgcaactgttcacttactattgtgctattttatgtcttcacaatatcgacggaccg
tgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGGCATTCGGCTTCTTATCTC 439 133 500 Antisense
TCTGTAACAGCTGCCATTTTGCCGT 247 607 523 Antisense
TTTTGCCGTCTGGTGTCACGACATA 458 675 539 Antisense
CAACAATATTTGGACTCCTCCACCC 569 189 588 Antisense
GTCACAACTTTCCGAGCAACTTTTC 119 465 617 Antisense
AAACTGCTACTATATTCTTGGTGAT 288 125 737 Antisense
GCACAACCGACAGAGATCGATCTAC 580 317 806 Antisense
TTGATTGCTATTCTACCACATGGTA 614 705 862 Antisense
GTACGATTTGCAACCATTTTTCAAT 244 459 943 Antisense
GCAACTGTTCACTTACTATTGTGCT 141 321 985 Antisense
TTCACAATATCGACGGACCGTGCGG 402 683 1020 Antisense
Sequence Source Affymetrix Proprietary Database