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[182779_at]

Description C45H4.8 /REP_DB=WormBase Gene ID /WP=CE08741 /TR=O44697 /GB=AAC25873.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 02      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 3.1
(-3)
A 		3.9
(-2.6)
A 		5.1
(-1.9)
A 		14
(3)
A 		11
B 1.6
(-2.9)
A 		1.6
(-2.9)
A 		1.5
(-3)
A 		11
(3)
A 		10
C 1.3
(-3)
A 		3.3
(-2.8)
A 		1.7
(-3)
A 		68.4
(3)
A 		67
avr 2
(-3) 		2.9
(-2.8) 		2.8
(-2.8) 		31.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.5
(-0.6)
A 		1.6
(-2.6)
A 		2
(-1.7)
A 		1.5
(-2.8)
A 		1.4
(-3)
A 		4.1
(3)
A 		3
B 1.8
(-1.8)
A 		1.3
(-3)
A 		3.7
(3)
A 		2.2
(-0.8)
A 		1.9
(-1.5)
A 		2
(-1.3)
A 		2
C 1.9
(-1.1)
A 		1.8
(-1.3)
A 		3.8
(3)
A 		2.2
(-0.4)
A 		1
(-3)
A 		1.2
(-2.6)
A 		3
avr 2.1
(-0.7) 		1.6
(-2.3) 		3.2
(3) 		2
(-1) 		1.4
(-3) 		2.4
(0.3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.1
(-2)
A 		0.9
(-3)
A 		1.3
(-1)
A 		2.1
(3)
A 		1
B 0.5
(-2.7)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2.3
(3)
A 		2
C 0.4
(-3)
A 		0.9
(-2.7)
A 		0.6
(-2.9)
A 		11.5
(3)
A 		11
avr 0.7
(-3) 		0.7
(-3) 		0.8
(-2.9) 		5.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-2)
A 		0.6
(-1)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1
(3)
A 		1
B 0.6
(-0.6)
A 		0.4
(-3)
A 		0.9
(3)
A 		0.6
(-0.6)
A 		0.8
(1.8)
A 		0.8
(1.8)
A 		1
C 0.7
(0.4)
A 		0.6
(-0.4)
A 		1
(3)
A 		0.4
(-2.1)
A 		0.3
(-3)
A 		0.4
(-2.1)
A 		1
avr 0.6
(-1) 		0.5
(-3) 		0.8
(3) 		0.5
(-3) 		0.5
(-3) 		0.7
(1) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182779_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15246
Sequence Type Exemplar sequence
Representative Public ID C45H4.8 NCBI
Target Description C45H4.8 /REP_DB=WormBase Gene ID /WP=CE08741 /TR=O44697 /GB=AAC25873.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071184(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071184 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-22) (srbc-22) mRNA, complete cds. 10/11 None
C45H4.8 ENSEMBL cdna:known chromosome:CEL140:V:2156958:2158102:1 gene:C45H4.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009343 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009359 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2156728-2158102(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-22
Ensembl C45H4.8
Entrez Gene 183489 Entrez gene
WormBase CE39092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503585 Serpentine Receptor, class BC (class B-like) family member (srbc-22) [Caenorhabditis elegans] 1.0E-151
blast AAC25873 Serpentine receptor, class bc (class b-like) protein 22 [Caenorhabditis elegans] 1.0E-147
blast AAC25874 Serpentine receptor, class bc (class b-like) protein 21 [Caenorhabditis elegans] ref|NP_503584.2| Serpentine Receptor, class BC (class B-like) family member (srbc-21) [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.5E-103
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503585.2 7 4-26,39-61,76-98,118-140,173-192,212-234,249-268
C45H4.8 7 4-26,39-61,76-98,118-140,173-192,212-234,249-268
Sequence
Target Sequence 
>C. ELEGANS:182779_AT
ggaaagcatcgggtgctaccgagtaaaattccaggcagttttcacacctgttttctaccg
acactaccgtccacttatttcgaactcggccattctaagtttgataattggctacgggct
atttgactacttaattatgtactttttttgcgattttgagtttgtaattcccacaagctg
tgtaacacttacttgttctatgaacttgtgctcaagtcagtactgggcaacttcaaaatc
agttattatttggcttacattcttcttcgcaattattttatcaatgaagcttctctggaa
agtcatcaaagaaaagaacaaagatttaaataaagcaagaactaaagctaaccgtctagc
actgatagatactgcaatcatatttttatttgatattttatcaaatatagttatacatta
cgttagtcgagaggatgtattcaatcttcaaaacggagggccgattctagcagttttgag
acaactgggatgtgtcgtagatgctttgttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAGCATCGGGTGCTACCGAGTA 337 527 402 Antisense
GGCAGTTTTCACACCTGTTTTCTAC 540 519 435 Antisense
TACCGTCCACTTATTTCGAACTCGG 425 647 466 Antisense
TCGAACTCGGCCATTCTAAGTTTGA 417 601 481 Antisense
TGGCTACGGGCTATTTGACTACTTA 624 543 510 Antisense
GTTTGTAATTCCCACAAGCTGTGTA 457 449 561 Antisense
GCTGTGTAACACTTACTTGTTCTAT 233 295 578 Antisense
GTCAGTACTGGGCAACTTCAAAATC 309 465 617 Antisense
TATTTGGCTTACATTCTTCTTCGCA 124 663 648 Antisense
GAGGGCCGATTCTAGCAGTTTTGAG 378 401 857 Antisense
GATGTGTCGTAGATGCTTTGTTGGT 449 405 890 Antisense
Sequence Source Affymetrix Proprietary Database