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[182778_at]

Description Y59A8A.3 /REP_DB=WormBase Gene ID /WP=CE26201 /TR=Q9GRZ9 /GB=CAC14400.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_high_8_8 > 60      6grp_highest_nonorm > 30      6grp_total > 28      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 777
1 2 3 4 range
A 739
(-0.3)
P 		977.3
(2.4)
P 		1030.2
(3)
P 		500.2
(-3)
M 		530
B 908
(1.3)
P 		791.5
(0.2)
P 		1082.8
(3)
P 		462.5
(-3)
A 		620
C 861.7
(0.6)
P 		913.2
(1)
P 		1169
(3)
P 		391.9
(-3)
P 		777
avr 836.2
(0.6) 		894
(1.1) 		1094
(3) 		451.5
(-3) 		643

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 883
1 2 3 4 5 6 range
A 857.3
(1.3)
P 		1002.4
(3)
P 		497.1
(-3)
P 		664.2
(-1)
P 		796.6
(0.6)
P 		823
(0.9)
P 		505
B 986.9
(3)
P 		884.6
(1.2)
P 		742.4
(-1.2)
P 		640.4
(-3)
P 		829.6
(0.3)
P 		698.5
(-2)
P 		347
C 1379.8
(3)
P 		821.3
(-0.9)
P 		834.2
(-0.9)
P 		531.3
(-3)
P 		932.9
(-0.2)
P 		690.6
(-1.9)
P 		849
avr 1074.7
(3) 		902.8
(0.8) 		691.2
(-2) 		612
(-3) 		853
(0.1) 		737.4
(-1.4) 		463
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 269.1
(3)
P 		212.2
(1.3)
P 		269.3
(3)
P 		73.2
(-3)
M 		196
B 289.6
(3)
P 		195.5
(0)
P 		250.9
(1.8)
P 		98.6
(-3)
A 		191
C 285.3
(0.9)
P 		262.5
(0.5)
P 		407.4
(3)
P 		66.1
(-3)
P 		341
avr 281.3
(2.3) 		223.4
(0.8) 		309.2
(3) 		79.3
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 158
(-1.8)
P 		356.5
(3)
P 		108.3
(-3)
P 		168.4
(-1.5)
P 		240.4
(0.2)
P 		200.4
(-0.8)
P 		248
B 343.4
(3)
P 		294.5
(1.3)
P 		180.3
(-2.6)
P 		169.6
(-3)
P 		337.1
(2.8)
P 		260.5
(0.1)
P 		174
C 511.4
(3)
P 		250.6
(-0.9)
P 		212.3
(-1.4)
P 		106.8
(-3)
P 		301.9
(-0.1)
P 		231.2
(-1.2)
P 		405
avr 337.6
(3) 		300.5
(1.8) 		167
(-2.4) 		148.3
(-3) 		293.1
(1.6) 		230.7
(-0.4) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182778_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14412
Sequence Type Exemplar sequence
Representative Public ID Y59A8A.3 NCBI
Target Description Y59A8A.3 /REP_DB=WormBase Gene ID /WP=CE26201 /TR=Q9GRZ9 /GB=CAC14400.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075105 NCBI Caenorhabditis elegans Y59A8A.3 (Y59A8A.3) mRNA, complete cds. 11/11 None
SNAP00000001055 ENSEMBL cdna:SNAP chromosome:CEL140:V:17848763:17858562:-1 11/11 None
Y59A8A.3.1 ENSEMBL cdna:known chromosome:CEL140:V:17848320:17858562:-1 gene:Y59A8A.3 11/11 None
Y59A8A.3.2 ENSEMBL cdna:known chromosome:CEL140:V:17848320:17858565:-1 gene:Y59A8A.3 11/11 None
Y59A8A.3.3 ENSEMBL cdna:known chromosome:CEL140:V:17848337:17858567:-1 gene:Y59A8A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001059 3/11 Cross Hyb Matching Probes None
GENEFINDER00000001062 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17848762-17858562(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59A8A.3
Entrez Gene 180167 Entrez gene
SwissProt Q9GRZ9 EMBL-EBI
WormBase CE26201 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14400 Hypothetical protein Y59A8A.3 [Caenorhabditis elegans] ref|NP_507506.1| Y59A8A.3 [Caenorhabditis elegans] 0.0
blast CAE61705 Hypothetical protein CBG05654 [Caenorhabditis briggsae] 6.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507506.1 1 12-31
Y59A8A.3.1 1 12-31
Y59A8A.3.2 1 12-31
Y59A8A.3.3 1 12-31
SNAP00000001055 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:182778_AT
aattccgttgaatcagccactggtggttgaggaggttattgagcttaaaaagacgaatgc
taatttggcagctgctgctccgagtacttcttctggagcttcaaaagaagacgaggaaac
tgagaagcttaaagctgaaaatgcccagttgcacgagaaaaatgaggagctccgccgccg
taatatgacaattctggaaaagacagaagccgaaccgggattggtgatttgtgagagaaa
aagagttgccgaagagatgggaaaacttgttaagaaacaattcaagacatttgacgatca
atcgcgttactacgaatggttgaacgaatcggtaagcggaatcaagaaggatttggattc
gaaagcttctgctccagcggcttcagttgttgctccaacaaaagctcaaaaagcaccaaa
atgtacggctgctgctccagcggcttcaactgctgctgctcgatccacaaatgaaggaga
atgctggaaggctcttaaagctatgaaagaccatctcgagctgatcgaccaactgaatga
cgaacaagaacgccgtcatcagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCGTTGAATCAGCCACTGGTG 582 177 1446 Antisense
AATGCTAATTTGGCAGCTGCTGCTC 656 165 1501 Antisense
AGCTGAAAATGCCCAGTTGCACGAG 477 79 1578 Antisense
GAGAAAAATGAGGAGCTCCGCCGCC 478 391 1600 Antisense
CCGCCGCCGTAATATGACAATTCTG 107 261 1617 Antisense
GACAGAAGCCGAACCGGGATTGGTG 99 363 1647 Antisense
GACGATCAATCGCGTTACTACGAAT 201 375 1738 Antisense
CACCAAAATGTACGGCTGCTGCTCC 173 203 1859 Antisense
ATGAAAGACCATCTCGAGCTGATCG 59 43 1948 Antisense
CGAGCTGATCGACCAACTGAATGAC 144 251 1962 Antisense
ACGAACAAGAACGCCGTCATCAGGA 180 75 1985 Antisense
Sequence Source Affymetrix Proprietary Database