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[182775_s_at]

Description C16B8.4 /REP_DB=WormBase Gene ID /WP=CE27693 /TR=Q18044 /GB=AAA82621.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 61      6grp_total > 04      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 615.1
(-0.1)
P 		470.6
(-3)
P 		476.4
(-2.9)
P 		769.6
(3)
P 		299
B 536.1
(0.1)
P 		334.4
(-3)
P 		417.9
(-1.7)
P 		729.9
(3)
P 		396
C 523.2
(3)
P 		505.8
(2.1)
P 		400.7
(-3)
P 		512.4
(2.5)
P 		123
avr 558.1
(0.2) 		436.9
(-2.9) 		431.7
(-3) 		670.6
(3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 629.9
(3)
P 		513.8
(0.6)
P 		336
(-3)
P 		476
(-0.1)
P 		472.8
(-0.2)
P 		401.3
(-1.7)
P 		294
B 533.4
(3)
P 		501.7
(1.8)
P 		370
(-3)
P 		487.8
(1.3)
P 		479.7
(1)
P 		401.8
(-1.8)
P 		163
C 493
(0.1)
P 		451.2
(-1.3)
P 		587.3
(3)
P 		538.2
(1.5)
P 		395.5
(-3)
P 		406.3
(-2.7)
P 		192
avr 552.1
(3) 		488.9
(0.5) 		431.1
(-1.9) 		500.7
(0.9) 		449.3
(-1.1) 		403.1
(-3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 224
(3)
P 		102.2
(-3)
P 		124.5
(-1.9)
P 		112.7
(-2.5)
P 		122
B 171
(3)
P 		82.6
(-3)
P 		96.8
(-2)
P 		155.5
(1.9)
P 		88
C 173.2
(3)
P 		145.4
(1.1)
P 		139.7
(0.7)
P 		86.4
(-3)
P 		87
avr 189.4
(3) 		110.1
(-3) 		120.3
(-2.2) 		118.2
(-2.4) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 116.1
(-0.6)
P 		182.7
(3)
P 		73.2
(-3)
P 		120.7
(-0.4)
P 		142.7
(0.8)
P 		97.7
(-1.7)
P 		110
B 185.6
(2.5)
P 		167
(1.4)
P 		89.9
(-3)
P 		129.2
(-0.8)
P 		194.9
(3)
P 		149.8
(0.4)
P 		105
C 182.7
(3)
P 		137.7
(-0.6)
P 		149.5
(0.3)
P 		108.2
(-3)
P 		128
(-1.4)
P 		136
(-0.8)
P 		75
avr 161.5
(2.9) 		162.5
(3) 		104.2
(-3) 		119.4
(-1.4) 		155.2
(2.2) 		127.8
(-0.6) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182775_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18096
Sequence Type Exemplar sequence
Representative Public ID C16B8.4 NCBI
Target Description C16B8.4 /REP_DB=WormBase Gene ID /WP=CE27693 /TR=Q18044 /GB=AAA82621.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076286 NCBI Caenorhabditis elegans C16B8.4 (C16B8.4) mRNA, complete cds. 11/11 None
SNAP00000002087 ENSEMBL cdna:SNAP chromosome:CEL140:X:3970644:3973600:-1 11/11 None
GENEFINDER00000002088 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3970644:3973612:-1 11/11 None
C16B8.4 ENSEMBL cdna:known chromosome:CEL140:X:3970367:3973612:-1 gene:C16B8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3970644-3972507(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16B8.4
Entrez Gene 180682 Entrez gene
SwissProt Q18044 EMBL-EBI
WormBase CE30248 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82621 Hypothetical protein C16B8.4 [Caenorhabditis elegans] ref|NP_508687.2| C16B8.4 [Caenorhabditis elegans] 0.0
blast CAE68509 Hypothetical protein CBG14320 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508687.2 2 7-29,441-460
C16B8.4 2 7-29,441-460
SNAP00000002087 2 7-29,441-460
GENEFINDER00000002088 2 7-29,463-482
Sequence
Target Sequence 
>C. ELEGANS:182775_S_AT
tggaccccacatattcaattcttttgtctcatctggagtttgactcgtcctacgcagtca
ctttttctgctctctcgtcggatcagaacactgcgacaacaccgatttcagtgaggttca
actcgtttcaatgcaagcaggtttatgggaaaggaagccttcaatgtgcccccgaatctg
tctccaatatccgagtggcaatccaacccaactctaccgcaatgataacctggaccgcat
cggctgaaccagaaaacattctaacctatgcaataacctaccaagcataccttggccctt
gcaataaggacccaacgacagtatacctacctgccccgtccacaagttatgagatgcctc
tcccacgcaacgttcattgcgagtttatgttccgcatcaccaactatgacgcaattggcc
gagaagcgtttgctgagacgaggattgctgtaatgcaagaaaagttgataaattcttcac
tgaaaatcatcgccgtcggagtttcgttcacttttctcatctttgctgtactttgttttg
ctgtctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACCCCACATATTCAATTCTTTT 270 547 467 Antisense
CTACGCAGTCACTTTTTCTGCTCTC 454 225 516 Antisense
TCTGCTCTCTCGTCGGATCAGAACA 219 609 532 Antisense
GAACACTGCGACAACACCGATTTCA 64 351 552 Antisense
TATCCGAGTGGCAATCCAACCCAAC 442 657 654 Antisense
AACCCAACTCTACCGCAATGATAAC 575 145 671 Antisense
GGACCCAACGACAGTATACCTACCT 337 497 774 Antisense
TGCCCCGTCCACAAGTTATGAGATG 140 585 798 Antisense
TATGTTCCGCATCACCAACTATGAC 80 657 852 Antisense
AATCATCGCCGTCGGAGTTTCGTTC 192 171 951 Antisense
TGCTGTACTTTGTTTTGCTGTCTGC 79 583 990 Antisense
Sequence Source Affymetrix Proprietary Database