[Home] | [Total List]

[182774_at]

Description F53C11.2 /REP_DB=WormBase Gene ID /WP=CE10906 /TR=Q93760 /GB=CAB02117.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 4
(-3)
A 		9.3
(-1.8)
A 		7.3
(-2.3)
A 		31.2
(3)
A 		27
B 4.8
(-3)
A 		7.9
(2.8)
A 		7.3
(1.7)
A 		8
(3)
A 		3
C 13.8
(-2)
A 		7.5
(-2.7)
A 		4.8
(-3)
A 		58.4
(3)
A 		54
avr 7.5
(-2.8) 		8.2
(-2.6) 		6.5
(-3) 		32.5
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.5
(-1.8)
A 		8.5
(0.8)
A 		12
(3)
A 		2.6
(-3)
A 		3
(-2.7)
A 		2.6
(-3)
A 		9
B 3.7
(-3)
A 		10.6
(3)
A 		8.2
(0.9)
A 		8.8
(1.4)
A 		5.9
(-1.1)
A 		3.7
(-3)
A 		7
C 8.9
(1.8)
A 		9.9
(3)
A 		6.4
(-1.3)
A 		7.8
(0.4)
A 		7
(-0.6)
A 		5
(-3)
A 		5
avr 5.7
(-1.1) 		9.7
(3) 		8.9
(2.2) 		6.4
(-0.4) 		5.3
(-1.5) 		3.8
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.4
(-3)
A 		2
(-1.9)
A 		1.9
(-2.1)
A 		4.6
(3)
A 		3
B 1.5
(-3)
A 		2
(3)
A 		1.7
(-0.6)
A 		1.7
(-0.6)
A 		1
C 4.6
(-0.9)
A 		2.2
(-2.6)
A 		1.7
(-3)
A 		9.9
(3)
A 		8
avr 2.5
(-1.8) 		2.1
(-2.5) 		1.8
(-3) 		5.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.8
(-2.5)
A 		3
(3)
A 		2.6
(2)
A 		0.7
(-2.8)
A 		0.9
(-2.3)
A 		0.6
(-3)
A 		2
B 1.3
(-3)
A 		3.5
(3)
A 		2
(-1.1)
A 		2.3
(-0.3)
A 		2.4
(-0)
A 		1.4
(-2.7)
A 		2
C 3.3
(3)
A 		3
(1.9)
A 		1.6
(-3)
A 		1.6
(-3)
A 		2.3
(-0.5)
A 		1.7
(-2.6)
A 		2
avr 1.8
(-1.2) 		3.2
(3) 		2.1
(-0.3) 		1.5
(-2.1) 		1.9
(-0.9) 		1.2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182774_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14473
Sequence Type Exemplar sequence
Representative Public ID F53C11.2 NCBI
Target Description F53C11.2 /REP_DB=WormBase Gene ID /WP=CE10906 /TR=Q93760 /GB=CAB02117.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074011
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007157 ENSEMBL cdna:SNAP chromosome:CEL140:V:13783392:13784214:-1 None
NM_074011 NCBI Caenorhabditis elegans F53C11.2 (F53C11.2) mRNA, complete cds. None
F53C11.2 ENSEMBL cdna:known chromosome:CEL140:V:13781299:13784457:-1 gene:F53C11.2 None
GENEFINDER00000007167 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13781027:13784457:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13779788-13784457(-) 98.63 100.0
Public Domain and Genome References
Gene Title
Ensembl F53C11.2
Entrez Gene 186165 Entrez gene
SwissProt Q93760 EMBL-EBI
WormBase CE32432 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02117 Hypothetical protein F53C11.2 [Caenorhabditis elegans] ref|NP_506412.2| F53C11.2 [Caenorhabditis elegans] 0.0
blast CAE66241 Hypothetical protein CBG11485 [Caenorhabditis briggsae] 0.0
blast CAA90058 Hypothetical protein F09B9.1 [Caenorhabditis elegans] ref|NP_509701.1| F09B9.1 [Caenorhabditis elegans] 1.0E-150
blast CAE62486 Hypothetical protein CBG06590 [Caenorhabditis briggsae] 1.0E-124
blast CAB02117 Hypothetical protein F53C11.2 [Caenorhabditis elegans] ref|NP_506412.2| F53C11.2 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506412.2 9 208-230,281-298,325-347,368-385,432-454,459-481,521-540,547-569,678-700
F53C11.2 9 208-230,281-298,325-347,368-385,432-454,459-481,521-540,547-569,678-700
SNAP00000007157 1 192-214
GENEFINDER00000007167 10 208-230,281-298,325-347,368-385,432-454,459-481,521-540,547-569,664-686,699-721
Sequence
Target Sequence 
>C. ELEGANS:182774_AT
gggctacttacttcaaacttctccaaagttggctggtcgtttttcgtttcatgggttatc
attgccaaccattatggatggggtggaccaatttgtagttttatgtgtcatccaatttgg
cagccatttggaagatggaattaatccccatgcatattcgacaatgcaaatggttttttt
ttctgaatttttgaaaataattctctacatttttagtttgtcttctattctattcctgga
actctactctcctacgcttttgcatttttctggagctcattatttgaagttcccgttgca
aaatctagcacccgcacctgacgtagtttcattaaactctactccaactggagttttgcc
aggagctccgaattcgactctgatcttagctccgggatcaccaatcactacatcgggaag
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTACTTACTTCAAACTTCTCCA 501 493 1875 Antisense
TCCAAAGTTGGCTGGTCGTTTTTCG 72 587 1896 Antisense
TCGTTTTTCGTTTCATGGGTTATCA 496 603 1911 Antisense
ATTAATCCCCATGCATATTCGACAA 309 13 2014 Antisense
GTCTTCTATTCTATTCCTGGAACTC 289 469 2094 Antisense
TCCCGTTGCAAAATCTAGCACCCGC 529 595 2165 Antisense
TTCATTAAACTCTACTCCAACTGGA 335 689 2202 Antisense
GAGTTTTGCCAGGAGCTCCGAATTC 297 397 2225 Antisense
CTCCGAATTCGACTCTGATCTTAGC 227 235 2240 Antisense
GATCTTAGCTCCGGGATCACCAATC 87 419 2256 Antisense
ATCACCAATCACTACATCGGGAAGG 112 29 2271 Antisense
Sequence Source Affymetrix Proprietary Database