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[182773_at]

Description Y37H2A.7 /REP_DB=WormBase Gene ID /WP=CE24213 /TR=Q9U2N4 /GB=CAB60576.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 25.1
(-2.2)
A 		15.8
(-3)
A 		71.1
(1.6)
A 		87.8
(3)
A 		72
B 31.4
(-3)
A 		61
(-0.4)
A 		62.8
(-0.2)
A 		99.1
(3)
A 		68
C 25.5
(-2)
A 		9
(-3)
A 		42.3
(-1)
A 		106.9
(3)
A 		98
avr 27.3
(-3) 		28.6
(-2.9) 		58.7
(-0.3) 		97.9
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 5.5
(-3)
A 		38
(-1.8)
A 		57.7
(-1)
A 		53.2
(-1.2)
A 		136.2
(2)
A 		163.3
(3)
A 		158
B 40.6
(-2.4)
A 		26.6
(-2.8)
A 		21.8
(-3)
A 		70.3
(-1.4)
A 		152.5
(1.2)
P 		208.2
(3)
P 		186
C 23.9
(-3)
A 		50.7
(-2.1)
A 		32.5
(-2.7)
A 		78.8
(-1.1)
A 		120.5
(0.3)
A 		201.4
(3)
P 		178
avr 23.3
(-3) 		38.4
(-2.5) 		37.3
(-2.5) 		67.4
(-1.4) 		136.4
(1) 		191
(3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.2
(-0.7)
A 		3.4
(-3)
A 		18.6
(3)
A 		12.9
(0.8)
A 		15
B 10
(-3)
A 		15.1
(-0.2)
A 		14.6
(-0.5)
A 		21.1
(3)
A 		11
C 8.4
(-0.7)
A 		2.6
(-3)
A 		14.7
(1.7)
A 		18
(3)
A 		15
avr 9.2
(-1.7) 		7
(-3) 		16
(2.2) 		17.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 1
(-3)
A 		13.5
(-1.1)
A 		12.6
(-1.3)
A 		13.5
(-1.1)
A 		41.1
(3)
A 		39.8
(2.8)
A 		40
B 14.1
(-2.3)
A 		8.8
(-2.7)
A 		5.3
(-3)
A 		18.6
(-1.9)
A 		61.9
(1.7)
P 		77.6
(3)
P 		72
C 8.8
(-2.9)
A 		15.5
(-2.3)
A 		8.3
(-3)
A 		15.8
(-2.2)
A 		39
(0.1)
A 		67.4
(3)
P 		59
avr 8
(-3) 		12.6
(-2.5) 		8.7
(-2.9) 		16
(-2.1) 		47.3
(1.4) 		61.6
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14480
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.7 NCBI
Target Description Y37H2A.7 /REP_DB=WormBase Gene ID /WP=CE24213 /TR=Q9U2N4 /GB=CAB60576.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075138(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075138 NCBI Caenorhabditis elegans Y37H2A.7 (Y37H2A.7) mRNA, complete cds. 11/11 None
SNAP00000043010 ENSEMBL cdna:SNAP chromosome:CEL140:V:18131864:18138796:-1 11/11 None
GENEFINDER00000043027 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18131864:18133683:-1 11/11 None
Y37H2A.7 ENSEMBL cdna:known chromosome:CEL140:V:18131864:18137052:-1 gene:Y37H2A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18131863-18137052(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.7
Entrez Gene 189630 Entrez gene
SwissProt Q9U2N4 EMBL-EBI
WormBase CE24213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60576 Hypothetical protein Y37H2A.7 [Caenorhabditis elegans] ref|NP_507539.1| Y37H2A.7 [Caenorhabditis elegans] 0.0
blast CAB60576 Hypothetical protein Y37H2A.7 [Caenorhabditis elegans] ref|NP_507539.1| Y37H2A.7 [Caenorhabditis elegans] 1.0E-122
blast CAB04510 Hypothetical protein F57G4.8 [Caenorhabditis elegans] ref|NP_507465.1| F57G4.8 [Caenorhabditis elegans] 2.0E-96
blast CAB04510 Hypothetical protein F57G4.8 [Caenorhabditis elegans] ref|NP_507465.1| F57G4.8 [Caenorhabditis elegans] 4.0E-94
blast CAB60572 Hypothetical protein Y37H2A.8 [Caenorhabditis elegans] ref|NP_507540.1| Y37H2A.8 [Caenorhabditis elegans] 1.0E-84
blast CAB60572 Hypothetical protein Y37H2A.8 [Caenorhabditis elegans] ref|NP_507540.1| Y37H2A.8 [Caenorhabditis elegans] 1.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.7E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.7E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.9E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-12
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.0E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.4E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.7E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.9E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-12
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.0E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182773_AT
tgcattctctacgagtttcttcaaaaaaagccagttttcgaagcatataagaatttctgc
aaaacaattggcgacgatcttatggaatatcgggaattcgatttttggttctataaaatt
ggaaaagaaaatgcggatttgagcggaaaactgatctggaacccggatagtctgacactt
tcgaatatgccgcttaaagttgttgacacgattttggagaatgtggagccaattgataga
ttgccgcttggaaaagtgtcacaaagcctgagaagtctcacaaaagccatcggccacggc
ttcaaaaaggtcgtgcttctcgtcgatcagaactacgtctggcttttgcttgattcaaat
cgaattgaatactcttttctgactgatgatagttgtacagtcgtttttttccagattctc
acaaaatcggaatgcttcgaggatggtctcatcaacgttctgacttgtgatcctgccgcc
attggaaaagtttttgatccaaactacgagcacaacggagccaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATTCTCTACGAGTTTCTTCAAA 332 579 1549 Antisense
GAACCCGGATAGTCTGACACTTTCG 655 345 1707 Antisense
GACACTTTCGAATATGCCGCTTAAA 701 361 1722 Antisense
AGAAGTCTCACAAAAGCCATCGGCC 80 75 1819 Antisense
GGCTTCAAAAAGGTCGTGCTTCTCG 429 537 1846 Antisense
GTGCTTCTCGTCGATCAGAACTACG 649 479 1861 Antisense
GAACTACGTCTGGCTTTTGCTTGAT 410 349 1878 Antisense
GTTGTACAGTCGTTTTTTTCCAGAT 664 437 1940 Antisense
GGATGGTCTCATCAACGTTCTGACT 371 515 1989 Antisense
TTGTGATCCTGCCGCCATTGGAAAA 273 709 2013 Antisense
ACTACGAGCACAACGGAGCCAACGA 705 99 2051 Antisense
Sequence Source Affymetrix Proprietary Database