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[182772_at]

Description F48G7.2 /REP_DB=WormBase Gene ID /WP=CE10756 /TR=O44591 /GB=AAG24126.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      6grp_highest_nonorm > 72      6grp_total > 74      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1585
1 2 3 4 range
A 80.4
(-2.8)
P 		45.8
(-3)
P 		45.4
(-3)
A 		1229.4
(3)
P 		1184
B 97.3
(-2.6)
P 		40.9
(-2.9)
P 		26.1
(-3)
A 		1008.7
(3)
P 		983
C 91.5
(-2.7)
A 		32.3
(-2.9)
M 		15.8
(-3)
A 		1600.7
(3)
P 		1585
avr 89.7
(-2.7) 		39.7
(-2.9) 		29.1
(-3) 		1279.6
(3) 		1251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 617
1 2 3 4 5 6 range
A 104.9
(-3)
P 		217.8
(-1.9)
P 		612.6
(2)
P 		720.2
(3)
P 		497.9
(0.8)
P 		412
(-0)
P 		615
B 103
(-3)
P 		207.4
(-1.6)
P 		397.3
(1)
P 		478
(2.1)
P 		542.9
(3)
P 		387.4
(0.9)
P 		440
C 150.5
(-3)
P 		196.1
(-2.2)
P 		303.8
(-0.4)
P 		498.2
(3)
P 		437.2
(1.9)
P 		444.7
(2.1)
P 		348
avr 119.5
(-3) 		207.1
(-1.8) 		437.9
(1.3) 		565.5
(3) 		492.7
(2) 		414.7
(1) 		446
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 29.3
(-2.3)
P 		9.9
(-3)
P 		11.9
(-2.9)
A 		180
(3)
P 		170
B 31
(-2.3)
P 		10.1
(-2.9)
P 		6.1
(-3)
A 		215
(3)
P 		209
C 30.3
(-2.4)
A 		9.3
(-2.9)
M 		5.5
(-3)
A 		269.9
(3)
P 		264
avr 30.2
(-2.4) 		9.8
(-2.9) 		7.8
(-3) 		221.6
(3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 19.3
(-3)
P 		77.5
(-0.9)
P 		133.4
(1.2)
P 		182.6
(3)
P 		150.3
(1.8)
P 		100.3
(-0)
P 		163
B 35.8
(-3)
P 		69
(-1.9)
P 		96.5
(-1)
P 		126.6
(-0.1)
P 		220.6
(3)
P 		144.5
(0.5)
P 		185
C 55.8
(-3)
P 		59.8
(-2.7)
P 		77.3
(-1.6)
P 		100.2
(-0.1)
P 		141.5
(2.5)
P 		148.9
(3)
P 		93
avr 37
(-3) 		68.8
(-1.6) 		102.4
(-0.1) 		136.5
(1.5) 		170.8
(3) 		131.2
(1.2) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15959
Sequence Type Exemplar sequence
Representative Public ID F48G7.2 NCBI
Target Description F48G7.2 /REP_DB=WormBase Gene ID /WP=CE10756 /TR=O44591 /GB=AAG24126.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070873
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000037313 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:636416:640251:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070873 8/11 Cross Hyb Matching Probes None
SNAP00000037299 8/11 Cross Hyb Matching Probes None
F48G7.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:636415-637846(+) 85.44 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24131 Serpentine receptor, class j protein 37 [Caenorhabditis elegans] ref|NP_503275.1| Serpentine Receptor, class J family member (srj-37) [Caenorhabditis elegans] 1.0E-140
blast T28746 hypothetical protein F48G7.2 - Caenorhabditis elegans 1.0E-139
blast T28747 hypothetical protein F48G7.1 - Caenorhabditis elegans 1.0E-134
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000037313 6 274-296,321-343,364-386,431-453,477-499,527-549
Sequence
Target Sequence 
>C. ELEGANS:182772_AT
tatacctgaagctggttttttcccagaagttaaaaaaggtgttgtggatggttttgtaga
aaagattgccgatgctaatcttagtttcaagaatcgaaatcccgagtttgaaatttttgt
gacatcttgctctcacgcagatccatatgctctacagcagacttttgagtacctaaacaa
agctgaaagattctttgcaagagatgaaattcaaaaaatctgcgaccacttggtaccggc
tgtagacaactacaattttcatttggtcgtggagcttgggaaaagagcgaagttgttgca
cgacgatctgatgaagcatcggaaagatattcacaacgaattaatttcggcgcaaaactc
gatttttgtcagtgaaattaccgatatattttgcgataaacaaactattttcagatcaca
ttttttggcagcaagttcgaatttattcagaaaaaagttcaatttttattattattacgg
ttattgtttttcatcaccttcttgggttatgtttttcaccaatttctgtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACCTGAAGCTGGTTTTTTCCCA 514 649 282 Antisense
TTTTGTGACATCTTGCTCTCACGCA 578 677 396 Antisense
CACGCAGATCCATATGCTCTACAGC 125 201 415 Antisense
GCTCTACAGCAGACTTTTGAGTACC 21 301 430 Antisense
AAAATCTGCGACCACTTGGTACCGG 440 131 496 Antisense
CTTGGTACCGGCTGTAGACAACTAC 65 217 510 Antisense
TTTCATTTGGTCGTGGAGCTTGGGA 357 671 538 Antisense
GCGAAGTTGTTGCACGACGATCTGA 439 289 568 Antisense
TTCAGATCACATTTTTTGGCAGCAA 500 687 691 Antisense
TTATTGTTTTTCATCACCTTCTTGG 74 679 762 Antisense
TATGTTTTTCACCAATTTCTGTATT 702 655 789 Antisense
Sequence Source Affymetrix Proprietary Database