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[182771_s_at]

Description Y70C5B.1 /REP_DB=WormBase Gene ID /WP=CE16672 /TR=O45980 /GB=CAA16431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 74.7
(-0.5)
A 		19.9
(-2.7)
A 		12.5
(-3)
A 		160.3
(3)
P 		148
B 55
(-1.3)
A 		77.8
(1.1)
A 		38.1
(-3)
A 		96.7
(3)
A 		59
C 48.1
(-3)
A 		62.1
(-2.3)
A 		48.1
(-3)
A 		167.9
(3)
P 		120
avr 59.3
(-1.5) 		53.3
(-1.9) 		32.9
(-3) 		141.6
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 100.5
(3)
A 		34.7
(-1.1)
A 		45.1
(-0.4)
A 		46.6
(-0.4)
A 		4.1
(-3)
A 		18.4
(-2.1)
A 		96
B 32.1
(-3)
A 		48.3
(1.7)
A 		44
(0.4)
A 		52.9
(3)
A 		50.9
(2.4)
A 		45.2
(0.8)
A 		21
C 89
(0.4)
A 		144.8
(3)
A 		76.2
(-0.2)
A 		14.7
(-3)
A 		47.5
(-1.5)
A 		28.8
(-2.3)
A 		130
avr 73.9
(2.7) 		75.9
(3) 		55.1
(0.2) 		38.1
(-2) 		34.2
(-2.5) 		30.8
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 27.2
(3)
A 		4.3
(-2.7)
A 		3.3
(-3)
A 		23.5
(2.1)
P 		24
B 17.5
(1.4)
A 		19.2
(2.3)
A 		8.8
(-3)
A 		20.6
(3)
A 		12
C 15.9
(-3)
A 		17.9
(-2)
A 		16.8
(-2.6)
A 		28.3
(3)
P 		12
avr 20.2
(1.4) 		13.8
(-1.3) 		9.6
(-3) 		24.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 18.5
(3)
A 		12.3
(0.8)
A 		9.8
(-0)
A 		11.8
(0.7)
A 		1.2
(-3)
A 		4.5
(-1.9)
A 		17
B 11.2
(-2.7)
A 		16.1
(0.2)
A 		10.7
(-3)
A 		14
(-1)
A 		20.7
(3)
A 		16.9
(0.7)
A 		10
C 33
(1.4)
A 		44.2
(3)
A 		19.4
(-0.6)
A 		2.9
(-3)
A 		15.4
(-1.2)
A 		9.7
(-2)
A 		41
avr 20.9
(1.6) 		24.2
(3) 		13.3
(-1.5) 		9.6
(-3) 		12.4
(-1.8) 		10.4
(-2.7) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182771_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13711
Sequence Type Exemplar sequence
Representative Public ID Y70C5B.1 NCBI
Target Description Y70C5B.1 /REP_DB=WormBase Gene ID /WP=CE16672 /TR=O45980 /GB=CAA16431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074814(11), NM_074815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074814 NCBI Caenorhabditis elegans W06G6.12 (W06G6.12) mRNA, complete cds. 11/11 A 
NM_074815 NCBI Caenorhabditis elegans Y70C5B.1 (Y70C5B.1) mRNA, complete cds. 11/11 None
GENEFINDER00000000243 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16655080:16660002:1 11/11 None
GENEFINDER00000026331 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16663856:16665563:-1 11/11 None
W06G6.12 ENSEMBL cdna:known chromosome:CEL140:V:16654424:16655926:1 gene:W06G6.12 11/11 A 
Y70C5B.1 ENSEMBL cdna:known chromosome:CEL140:V:16664696:16665542:-1 gene:Y70C5B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000237 6/11 Cross Hyb Matching Probes None
SNAP00000026329 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16655079-16655926(+) 100.0 100.0
chrV:16664695-16665542(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl W06G6.12
Y70C5B.1
Entrez Gene 189262 Entrez gene
190565 Entrez gene
SwissProt Q9U337 EMBL-EBI
O45980 EMBL-EBI
WormBase CE20157 Wormbase
CE16672 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05644 Hypothetical protein W06G6.12 [Caenorhabditis elegans] ref|NP_507215.1| W06G6.12 [Caenorhabditis elegans] 1.0E-150
blast CAA16431 Hypothetical protein Y70C5B.1 [Caenorhabditis elegans] ref|NP_507216.1| Y70C5B.1 [Caenorhabditis elegans] 1.0E-100
blast CAB05644 Hypothetical protein W06G6.12 [Caenorhabditis elegans] ref|NP_507215.1| W06G6.12 [Caenorhabditis elegans] 1.0E-100
blast CAA16431 Hypothetical protein Y70C5B.1 [Caenorhabditis elegans] ref|NP_507216.1| Y70C5B.1 [Caenorhabditis elegans] 1.0E-96
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000243 3 197-219,232-254,296-318
Sequence
Target Sequence 
>C. ELEGANS:182771_S_AT
aatcgacgtggacgagttctacccgccaacagacaagtacctagtttttgctcattggga
atgttgtgcctattgggtgagcaaaagaatgagttcacaggagcaccacacttgtcccaa
ttgcaattgcagagttaaagcccatgtggctttttctttggtcaccgatgcgtttgaatt
caagaactatttgattgttgtcaacgccgtggaaaaatttcaggcagctcaggtccgagc
cttgtcagattatttggatcagaaaaatcagatagagagtcaaatgcttcctagctccct
ttcaaacacaccggaatacccaggcaataacggacaatttttcaaatcctggcttttctg
ggacattccctacccaatgccagaggttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGACGTGGACGAGTTCTACCCG 282 169 57 Antisense
ACCCGCCAACAGACAAGTACCTAGT 353 89 77 Antisense
AGTACCTAGTTTTTGCTCATTGGGA 5 61 92 Antisense
AGCCCATGTGGCTTTTTCTTTGGTC 441 79 195 Antisense
TTCTTTGGTCACCGATGCGTTTGAA 219 691 210 Antisense
AAATTTCAGGCAGCTCAGGTCCGAG 612 113 271 Antisense
TCAGGTCCGAGCCTTGTCAGATTAT 105 623 285 Antisense
GAGAGTCAAATGCTTCCTAGCTCCC 399 381 331 Antisense
AACACACCGGAATACCCAGGCAATA 326 131 361 Antisense
AATCCTGGCTTTTCTGGGACATTCC 285 167 401 Antisense
TTCCCTACCCAATGCCAGAGGTTTA 107 693 422 Antisense
Sequence Source Affymetrix Proprietary Database